Gm3339 (predicted gene 3339) - Rat Genome Database

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Gene: Gm3339 (predicted gene 3339) Mus musculus
Analyze
Symbol: Gm3339
Name: predicted gene 3339
RGD ID: 2307536
MGI Page MGI
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 100041438; 100041565; Gm3408
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391417,189,246 - 17,191,358 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1417,189,251 - 17,191,998 (+)EnsemblGRCm39 Ensembl
GRCm38145,278,415 - 5,280,527 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl145,277,775 - 5,280,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv37146,561,939 - 6,622,928 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36146,566,120 - 6,568,602 (-)NCBIMGSCv36mm8
Cytogenetic Map14A2NCBI
cM Map143.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm3339
91 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:96
Interacting mature miRNAs:98
Transcripts:ENSMUST00000163462
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412071Ssen3_msuseptibility to Sendai virus 3 (mouse)Not determined14126987934Mouse
11532711Sluc40_msusceptibility to lung cancer 40 (mouse)14127379943Mouse
13824988Phsq1_mpercent hyperactivated sperm QTL 1 (mouse)14305000119469772Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141265Appd2_mAPP associated premature death 2 (mouse)Not determined14594555230114862Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_032130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC190173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000163462
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1417,189,251 - 17,191,998 (+)Ensembl
GRCm38.p6 Ensembl145,277,775 - 5,280,522 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091995 Ensembl
MGD MGI:3781517 ENTREZGENE
NCBI Gene 100041438 ENTREZGENE
PhenoGen Gm3339 PhenoGen