UBA52P7 (ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 7) - Rat Genome Database

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Gene: UBA52P7 (ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 7) Homo sapiens
Analyze
Symbol: UBA52P7
Name: ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 7
RGD ID: 2305675
HGNC Page HGNC:36615
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL40_2_1281
Related Functional Gene: UBA52  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812115,592,530 - 115,593,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12115,592,604 - 115,592,983 (-)EnsemblGRCh38hg38GRCh38
GRCh3712116,030,335 - 116,030,828 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612114,514,792 - 114,515,171 (-)NCBINCBI36Build 36hg18NCBI36
Celera12115,659,534 - 115,659,913 (-)NCBICelera
Cytogenetic Map12q24.21NCBI
HuRef12113,040,636 - 113,041,015 (-)NCBIHuRef
CHM1_112115,998,098 - 115,998,477 (-)NCBICHM1_1
T2T-CHM13v2.012115,571,679 - 115,572,172 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:249
Count of miRNA genes:229
Interacting mature miRNAs:249
Transcripts:ENST00000486088
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 4 1 1 3 4 28 6 1
Below cutoff 73 112 42 16 69 1 202 94 86 18 280 62 15 46 143

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000486088
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12115,592,604 - 115,592,983 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC UBA52P7 COSMIC
Ensembl Genes ENSG00000241656 Ensembl
GTEx ENSG00000241656 GTEx
HGNC ID HGNC:36615 ENTREZGENE
Human Proteome Map UBA52P7 Human Proteome Map
NCBI Gene 100128617 ENTREZGENE