RPL5P7 (ribosomal protein L5 pseudogene 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RPL5P7 (ribosomal protein L5 pseudogene 7) Homo sapiens
Analyze
Symbol: RPL5P7
Name: ribosomal protein L5 pseudogene 7
RGD ID: 2305597
HGNC Page HGNC:36583
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL5_2_294
Related Functional Gene: RPL5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382173,871,572 - 173,872,567 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2173,871,653 - 173,872,465 (-)EnsemblGRCh38hg38GRCh38
GRCh372174,736,300 - 174,737,295 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera2168,349,729 - 168,350,724 (-)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2166,615,895 - 166,616,890 (-)NCBIHuRef
CHM1_12174,743,305 - 174,744,300 (-)NCBICHM1_1
T2T-CHM13v2.02174,357,910 - 174,358,905 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:47
Interacting mature miRNAs:47
Transcripts:ENST00000444235
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 8 19 1 2 1
Below cutoff 146 351 106 47 358 32 376 113 162 26 179 161 16 94 230 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000444235
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2173,871,653 - 173,872,465 (-)Ensembl
Protein Sequences
GenBank Protein EAX11157 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC RPL5P7 COSMIC
Ensembl Genes ENSG00000234415 Ensembl, ENTREZGENE
GTEx ENSG00000234415 GTEx
HGNC ID HGNC:36583 ENTREZGENE
Human Proteome Map RPL5P7 Human Proteome Map
NCBI Gene 344178 ENTREZGENE