RPL5P15 (ribosomal protein L5 pseudogene 15) - Rat Genome Database

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Gene: RPL5P15 (ribosomal protein L5 pseudogene 15) Homo sapiens
Analyze
Symbol: RPL5P15
Name: ribosomal protein L5 pseudogene 15
RGD ID: 2305441
HGNC Page HGNC:36769
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL5_6_566
Related Functional Gene: RPL5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38558,822,441 - 58,823,248 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl558,822,503 - 58,823,714 (+)EnsemblGRCh38hg38GRCh38
GRCh37558,118,268 - 58,119,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera555,058,763 - 55,059,500 (+)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef555,075,667 - 55,076,404 (+)NCBIHuRef
CHM1_1558,118,060 - 58,118,797 (+)NCBICHM1_1
T2T-CHM13v2.0559,641,008 - 59,641,815 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:81
Interacting mature miRNAs:82
Transcripts:ENST00000475870
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 6 1 4 1
Below cutoff 259 166 247 33 55 19 325 186 950 23 137 90 15 207 187

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000475870
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl558,822,503 - 58,823,714 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL5P15 COSMIC
Ensembl Genes ENSG00000240412 Ensembl
GTEx ENSG00000240412 GTEx
HGNC ID HGNC:36769 ENTREZGENE
Human Proteome Map RPL5P15 Human Proteome Map
NCBI Gene 100270836 ENTREZGENE