RPS10P27 (ribosomal protein S10 pseudogene 27) - Rat Genome Database

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Gene: RPS10P27 (ribosomal protein S10 pseudogene 27) Homo sapiens
Analyze
Symbol: RPS10P27
Name: ribosomal protein S10 pseudogene 27
RGD ID: 2305101
HGNC Page HGNC:36850
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS10_12_1588
Related Functional Gene: RPS10  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381823,672,204 - 23,672,785 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1823,672,253 - 23,672,748 (-)EnsemblGRCh38hg38GRCh38
GRCh371821,252,168 - 21,252,749 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361819,506,212 - 19,506,710 (-)NCBINCBI36Build 36hg18NCBI36
Celera1818,068,340 - 18,068,921 (-)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1818,107,524 - 18,108,105 (-)NCBIHuRef
CHM1_11821,179,481 - 21,180,062 (-)NCBICHM1_1
T2T-CHM13v2.01823,866,478 - 23,867,059 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:64
Interacting mature miRNAs:64
Transcripts:ENST00000586795
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1 1 9 1 2 1 3 24 2 1
Below cutoff 279 304 184 44 125 25 640 235 279 31 278 198 20 161 379

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000586795
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1823,672,253 - 23,672,748 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS10P27 COSMIC
Ensembl Genes ENSG00000267752 Ensembl, ENTREZGENE
GTEx ENSG00000267752 GTEx
HGNC ID HGNC:36850 ENTREZGENE
Human Proteome Map RPS10P27 Human Proteome Map
NCBI Gene 100129556 ENTREZGENE