RPL21P41 (ribosomal protein L21 pseudogene 41) - Rat Genome Database

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Gene: RPL21P41 (ribosomal protein L21 pseudogene 41) Homo sapiens
Analyze
Symbol: RPL21P41
Name: ribosomal protein L21 pseudogene 41
RGD ID: 2305033
HGNC Page HGNC:36765
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL21_11_380
Related Functional Gene: RPL21  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38366,637,149 - 66,637,542 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl366,637,149 - 66,637,412 (+)EnsemblGRCh38hg38GRCh38
GRCh37366,687,573 - 66,687,966 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera366,633,402 - 66,633,795 (+)NCBICelera
Cytogenetic Map3p14.1NCBI
HuRef366,704,634 - 66,705,027 (+)NCBIHuRef
CHM1_1366,638,935 - 66,639,328 (+)NCBICHM1_1
T2T-CHM13v2.0366,681,769 - 66,682,162 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:207
Interacting mature miRNAs:210
Transcripts:ENST00000459863
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 4 3 2 12 4 1 3 8 182 3 3
Below cutoff 66 53 52 6 27 4 142 61 94 19 178 51 2 35 96

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000459863
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl366,637,149 - 66,637,412 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL21P41 COSMIC
Ensembl Genes ENSG00000214560 Ensembl
GTEx ENSG00000214560 GTEx
HGNC ID HGNC:36765 ENTREZGENE
Human Proteome Map RPL21P41 Human Proteome Map
NCBI Gene 100271159 ENTREZGENE