RPL35AP18 (ribosomal protein L35a pseudogene 18) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RPL35AP18 (ribosomal protein L35a pseudogene 18) Homo sapiens
Analyze
Symbol: RPL35AP18
Name: ribosomal protein L35a pseudogene 18
RGD ID: 2304824
HGNC Page HGNC:36812
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL35A_8_717
Related Functional Gene: RPL35A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38679,964,215 - 79,964,522 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl679,964,215 - 79,964,519 (+)EnsemblGRCh38hg38GRCh38
GRCh37680,673,932 - 80,674,239 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36680,673,932 - 80,674,239 (+)NCBINCBI36Build 36hg18NCBI36
Celera681,091,913 - 81,092,220 (+)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef677,896,784 - 77,897,091 (+)NCBIHuRef
CHM1_1680,771,408 - 80,771,715 (+)NCBICHM1_1
T2T-CHM13v2.0681,172,611 - 81,172,918 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:215
Count of miRNA genes:209
Interacting mature miRNAs:214
Transcripts:ENST00000404414
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 4 1 2 3
Below cutoff 5 14 9 5 15 2 17 12 36 7 28 17 3 3 11

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000404414
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl679,964,215 - 79,964,519 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL35AP18 COSMIC
Ensembl Genes ENSG00000220311 Ensembl, ENTREZGENE
GTEx ENSG00000220311 GTEx
HGNC ID HGNC:36812 ENTREZGENE
Human Proteome Map RPL35AP18 Human Proteome Map
NCBI Gene 100271321 ENTREZGENE