RPL21P123 (ribosomal protein L21 pseudogene 123) - Rat Genome Database

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Gene: RPL21P123 (ribosomal protein L21 pseudogene 123) Homo sapiens
Analyze
Symbol: RPL21P123
Name: ribosomal protein L21 pseudogene 123
RGD ID: 2304687
HGNC Page HGNC:35691
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL21_59_1535
Related Functional Gene: RPL21  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381729,716,280 - 29,716,725 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1729,716,279 - 29,716,685 (-)EnsemblGRCh38hg38GRCh38
GRCh371728,043,298 - 28,043,743 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361728,043,297 - 28,043,703 (-)NCBINCBI36Build 36hg18NCBI36
Celera1724,904,370 - 24,904,776 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1724,252,673 - 24,253,079 (-)NCBIHuRef
CHM1_11728,105,765 - 28,106,171 (-)NCBICHM1_1
T2T-CHM13v2.01730,659,170 - 30,659,615 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:100
Interacting mature miRNAs:102
Transcripts:ENST00000493028
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 4 13 1 1
Low 111 262 72 10 567 13 222 72 186 66 119 180 4 41 127 2
Below cutoff 969 1150 643 194 714 130 1790 884 1588 157 535 757 66 475 1193 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000493028
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1729,716,279 - 29,716,685 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL21P123 COSMIC
Ensembl Genes ENSG00000240531 Ensembl, ENTREZGENE
GTEx ENSG00000240531 GTEx
HGNC ID HGNC:35691 ENTREZGENE
Human Proteome Map RPL21P123 Human Proteome Map
NCBI Gene 100271448 ENTREZGENE