RPS27P26 (ribosomal protein S27 pseudogene 26) - Rat Genome Database

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Gene: RPS27P26 (ribosomal protein S27 pseudogene 26) Homo sapiens
Analyze
Symbol: RPS27P26
Name: ribosomal protein S27 pseudogene 26
RGD ID: 2304531
HGNC Page HGNC:36904
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS27_12_1494
Related Functional Gene: RPS27  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381670,444,674 - 70,444,912 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1670,444,674 - 70,444,912 (-)EnsemblGRCh38hg38GRCh38
GRCh371670,478,577 - 70,478,815 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361670,478,577 - 70,478,815 (-)NCBINCBI36Build 36hg18NCBI36
Celera1655,049,482 - 55,049,720 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1656,310,692 - 56,310,930 (-)NCBIHuRef
CHM1_11671,885,948 - 71,886,186 (-)NCBICHM1_1
T2T-CHM13v2.01676,255,702 - 76,255,940 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:43
Interacting mature miRNAs:43
Transcripts:ENST00000494583
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 8 1 1 17 1 6 1 1 93 4 1
Below cutoff 71 33 54 18 91 19 74 39 114 17 213 68 2 20 38 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000494583
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1670,444,674 - 70,444,912 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS27P26 COSMIC
Ensembl Genes ENSG00000240043 Ensembl, ENTREZGENE
GTEx ENSG00000240043 GTEx
HGNC ID HGNC:36904 ENTREZGENE
Human Proteome Map RPS27P26 Human Proteome Map
NCBI Gene 100271583 ENTREZGENE