RPS27P25 (ribosomal protein S27 pseudogene 25) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RPS27P25 (ribosomal protein S27 pseudogene 25) Homo sapiens
Analyze
Symbol: RPS27P25
Name: ribosomal protein S27 pseudogene 25
RGD ID: 2304530
HGNC Page HGNC:36020
Description: INTERACTS WITH ethylparaben
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS27_14_1288
Related Functional Gene: RPS27  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812120,371,355 - 120,371,695 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12120,371,388 - 120,371,635 (+)EnsemblGRCh38hg38GRCh38
GRCh3712120,809,158 - 120,809,498 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612120,809,159 - 120,809,498 (+)NCBINCBI36Build 36hg18NCBI36
Celera12120,442,253 - 120,442,592 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12117,817,220 - 117,817,559 (+)NCBIHuRef
CHM1_112120,777,103 - 120,777,442 (+)NCBICHM1_1
T2T-CHM13v2.012120,358,532 - 120,358,872 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ethylparaben  (EXP)

References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:154
Count of miRNA genes:101
Interacting mature miRNAs:103
Transcripts:ENST00000469928, ENST00000477404
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage pharyngeal arch
High
Medium 1 10 17 17 1
Low 169 15 402 23 22 18 217 17 2427 31 525 116 7 1 3 21 2
Below cutoff 833 668 492 145 262 88 984 484 780 138 500 448 60 235 624

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000469928
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12120,371,388 - 120,371,635 (+)Ensembl
RefSeq Acc Id: ENST00000477404
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12120,369,440 - 120,371,688 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS27P25 COSMIC
Ensembl Genes ENSG00000239881 Ensembl
GTEx ENSG00000239881 GTEx
HGNC ID HGNC:36020 ENTREZGENE
Human Proteome Map RPS27P25 Human Proteome Map
NCBI Gene 100271584 ENTREZGENE