RPL31P45 (ribosomal protein L31 pseudogene 45) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RPL31P45 (ribosomal protein L31 pseudogene 45) Homo sapiens
Analyze
Symbol: RPL31P45
Name: ribosomal protein L31 pseudogene 45
RGD ID: 2304412
HGNC Page HGNC:36796
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL31_22_1025
Related Functional Gene: RPL31  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381022,266,990 - 22,267,205 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1022,266,991 - 22,267,346 (+)EnsemblGRCh38hg38GRCh38
GRCh371022,555,919 - 22,556,134 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361022,595,926 - 22,596,141 (+)NCBINCBI36Build 36hg18NCBI36
Celera1022,243,632 - 22,243,847 (+)NCBICelera
Cytogenetic Map10p12.31NCBI
HuRef1022,217,416 - 22,217,631 (+)NCBIHuRef
CHM1_11022,556,648 - 22,556,863 (+)NCBICHM1_1
T2T-CHM13v2.01022,286,023 - 22,286,238 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:11181995   PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:214
Count of miRNA genes:207
Interacting mature miRNAs:213
Transcripts:ENST00000419532
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1
Low 2 4 2 10 1 4 50 1 2
Below cutoff 20 25 18 3 23 1 67 26 86 11 218 24 2 19 55

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000419532
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1022,266,991 - 22,267,346 (+)Ensembl
RefSeq Acc Id: XM_001129903
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361022,595,926 - 22,596,141 (+)NCBI Archive
Protein Sequences
GenBank Protein EAW86156 (Get FASTA)   NCBI Sequence Viewer  
  EAW86157 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC RPL31P45 COSMIC
Ensembl Genes ENSG00000233318 Ensembl
GTEx ENSG00000233318 GTEx
HGNC ID HGNC:36796 ENTREZGENE
Human Proteome Map RPL31P45 Human Proteome Map
NCBI Gene 729308 ENTREZGENE