RPS4XP1 (ribosomal protein S4X pseudogene 1) - Rat Genome Database

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Gene: RPS4XP1 (ribosomal protein S4X pseudogene 1) Homo sapiens
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Symbol: RPS4XP1
Name: ribosomal protein S4X pseudogene 1
RGD ID: 2303322
HGNC Page HGNC:32444
Description: INTERACTS WITH aristolochic acid A
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS4P1; RPS4X_6_1269
Related Functional Gene: RPS4X  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812100,008,987 - 100,009,891 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12100,009,052 - 100,009,838 (-)EnsemblGRCh38hg38GRCh38
GRCh3712100,402,765 - 100,403,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361298,926,958 - 98,927,747 (-)NCBINCBI36Build 36hg18NCBI36
Celera12100,068,040 - 100,068,947 (-)NCBICelera
Cytogenetic Map12q23.1NCBI
HuRef1297,464,038 - 97,464,945 (-)NCBIHuRef
CHM1_112100,368,422 - 100,369,329 (-)NCBICHM1_1
T2T-CHM13v2.01299,970,206 - 99,971,110 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:98
Interacting mature miRNAs:99
Transcripts:ENST00000482189
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559125SPSL2_HSerum P-selectin level QTL 2 (human)2.59Serum P-selectin level1289897665115897665Human
1643258BW205_HBody weight QTL 205 (human)4.080.00001Body fat amountpercent body fat1296630114122630114Human
1643264BW195_HBody weight QTL 195 (human)0.0151Body weightBMI1289897665115897665Human
1357387BW58_HBody weight QTL 58 (human)2.30.0001Body weightfat free mass after exercise training1289438856115438856Human
1358827MULTSCL22_HMultiple sclerosis susceptibility QTL 22 (human)Multiple sclerosis susceptibility1289897665115897665Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1145 2191 2583 1958 4281 1560 2112 3 538 1665 385 2104 6286 5761 51 3150 692 1550 1476 161

Sequence


Ensembl Acc Id: ENST00000482189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12100,009,052 - 100,009,838 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS4XP1 COSMIC
Ensembl Genes ENSG00000214203 Ensembl, ENTREZGENE
GTEx ENSG00000214203 GTEx
HGNC ID HGNC:32444 ENTREZGENE
Human Proteome Map RPS4XP1 Human Proteome Map
NCBI Gene RPS4XP1 ENTREZGENE
PharmGKB PA142670994 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 RPS4XP1  ribosomal protein S4X pseudogene 1  RPS4P1  ribosomal protein S4 pseudogene 1  Symbol and/or name change 5135510 APPROVED