Zfp955b (zinc finger protein 955B) - Rat Genome Database

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Gene: Zfp955b (zinc finger protein 955B) Mus musculus
Analyze
Symbol: Zfp955b
Name: zinc finger protein 955B
RGD ID: 2302588
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 100043468; A430003O12Rik; C430039G02Rik; C530035A18Rik; Gm4455; Zfp883b; zinc finger protein 422, related sequence 1-like; zinc finger protein 883B
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391733,508,495 - 33,526,213 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1733,508,518 - 33,526,215 (+)EnsemblGRCm39 Ensembl
GRCm381733,289,521 - 33,307,239 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,289,544 - 33,307,241 (+)EnsemblGRCm38mm10GRCm38
MGSCv371733,426,489 - 33,441,634 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,426,489 - 33,442,253 (+)NCBIMGSCv36mm8
Celera1736,063,672 - 36,067,781 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics

Comparative Map Data
Zfp955b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391733,508,495 - 33,526,213 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1733,508,518 - 33,526,215 (+)EnsemblGRCm39 Ensembl
GRCm381733,289,521 - 33,307,239 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,289,544 - 33,307,241 (+)EnsemblGRCm38mm10GRCm38
MGSCv371733,426,489 - 33,441,634 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,426,489 - 33,442,253 (+)NCBIMGSCv36mm8
Celera1736,063,672 - 36,067,781 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Zfp955b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8713,260,517 - 13,275,939 (+)NCBIGRCr8
mRatBN7.2712,610,224 - 12,625,537 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl712,610,196 - 12,622,587 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map7q11NCBI

Variants

.
Variants in Zfp955b
618 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:66
Interacting mature miRNAs:67
Transcripts:ENSMUST00000099414
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173206165237644775Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
11038694Pas19_mpulmonary adenoma susceptibility 19 (mouse)172971116434754437Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
25394538Skmw84_mskeletal muscle weight 84, TA (mouse)173266042635520036Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000099414   ⟹   ENSMUSP00000097011
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1733,508,518 - 33,526,215 (+)Ensembl
GRCm38.p6 Ensembl1733,289,544 - 33,307,241 (+)Ensembl
Ensembl Acc Id: ENSMUST00000234813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1733,521,335 - 33,523,141 (+)Ensembl
GRCm38.p6 Ensembl1733,302,361 - 33,304,167 (+)Ensembl
RefSeq Acc Id: NM_001142957   ⟹   NP_001136429
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391733,508,518 - 33,523,663 (+)NCBI
GRCm381733,289,544 - 33,304,689 (+)NCBI
Celera1736,063,672 - 36,067,781 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249401   ⟹   XP_030105261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391733,508,495 - 33,526,213 (+)NCBI
GRCm381733,289,521 - 33,307,239 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249402   ⟹   XP_030105262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391733,508,495 - 33,526,213 (+)NCBI
GRCm381733,289,521 - 33,307,239 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001136429 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105261 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105262 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB32345 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000097011
  ENSMUSP00000097011.4
RefSeq Acc Id: NP_001136429   ⟸   NM_001142957
- UniProtKB: L7N232 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030105262   ⟸   XM_030249402
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030105261   ⟸   XM_030249401
- Peptide Label: isoform X1
Ensembl Acc Id: ENSMUSP00000097011   ⟸   ENSMUST00000099414
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-L7N232-F1-model_v2 AlphaFold L7N232 1-545 view protein structure

Promoters
RGD ID:13675562
Promoter ID:EPDNEW_M21930
Type:multiple initiation site
Name:Zfp955b_1
Description:Mus musculus zinc finger protein 955B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381733,289,552 - 33,289,612EPDNEW
RGD ID:6828158
Promoter ID:MM_KWN:23095
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Liver,   Spleen
Transcripts:NM_001142957
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361733,426,291 - 33,426,791 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:4834573 AgrOrtholog
Ensembl Genes ENSMUSG00000096910 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000099414 ENTREZGENE
  ENSMUST00000099414.5 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:100043468 UniProtKB/TrEMBL
MGD MGI:4834573 ENTREZGENE
NCBI Gene 100043468 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  RCG31665-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER IMPRINTED 2 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp955b PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt L7N232 ENTREZGENE, UniProtKB/TrEMBL
  Q9CS13_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-09-17 Zfp955b  zinc finger protein 955B  Gm4455  predicted gene 4455  Symbol and/or name change 5135510 APPROVED