WASH5P (WASP family homolog 5, pseudogene)

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Gene: WASH5P (WASP family homolog 5, pseudogene) Homo sapiens

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Symbol:

WASH5P

Name:

WASP family homolog 5, pseudogene

RGD ID:

2302258

HGNC Page

HGNC:33884

Description:

INTERACTS WITH 2-hydroxypropanoic acid; 3-isobutyl-1-methyl-7H-xanthine; 4,4'-sulfonyldiphenol

Type:

pseudo (Ensembl: transcribed_processed_pseudogene)

RefSeq Status:

VALIDATED

Previously known as:

FAM39F; family with sequence similarity 39, member F; FLJ35264; FLJ50976; FLJ51139; FLJ98676; FLJ99967; WAS protein family homolog 5 pseudogene; WAS protein family homolog 5, pseudogene

Related Functional Gene:

WASHC1

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	60,951 - 70,966 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	66,320 - 66,492 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p14 Ensembl	19	60,951 - 72,334 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	60,951 - 70,966 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	4,517 - 7,479 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	155,394,459 - 155,407,034 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	X	143,732,815 - 143,733,266 (+)	NCBI		HuRef
CHM1_1	15	102,352,063 - 102,362,078 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	11,934 - 21,953 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
WASH5P	Human	2-hydroxypropanoic acid	increases expression	EXP		6480464	Lactic Acid results in increased expression of WASH5P mRNA	CTD	PMID:30851411
WASH5P	Human	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of WASH5P mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of WASH5P mRNA	CTD	PMID:28628672
WASH5P	Human	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of WASH5P mRNA	CTD	PMID:28628672
WASH5P	Human	acrolein	multiple interactions	EXP		6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of WASH5P mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in decreased expression of WASH5P mRNA	CTD	PMID:32699268
WASH5P	Human	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of WASH5P mRNA	CTD	PMID:32763439
WASH5P	Human	alpha-pinene	multiple interactions	EXP		6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of WASH5P mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in decreased expression of WASH5P mRNA	CTD	PMID:32699268
WASH5P	Human	antirheumatic drug	increases expression	EXP		6480464	Antirheumatic Agents results in increased expression of WASH5P mRNA	CTD	PMID:24449571
WASH5P	Human	benzo[a]pyrene	increases methylation	EXP		6480464	Benzo(a)pyrene results in increased methylation of WASH5P promoter	CTD	PMID:27901495
WASH5P	Human	bisphenol F	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of WASH5P mRNA	CTD	PMID:28628672
WASH5P	Human	dexamethasone	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of WASH5P mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of WASH5P mRNA	CTD	PMID:28628672
WASH5P	Human	dicrotophos	increases expression	EXP		6480464	dicrotophos results in increased expression of WASH5P mRNA	CTD	PMID:28302478
WASH5P	Human	doxorubicin	decreases expression	EXP		6480464	Doxorubicin results in decreased expression of WASH5P mRNA	CTD	PMID:29803840
WASH5P	Human	fipronil	multiple interactions	EXP		6480464	[fipronil co-treated with DEET] results in decreased expression of WASH5P mRNA	CTD	PMID:28991164
WASH5P	Human	fipronil	decreases expression	EXP		6480464	fipronil results in decreased expression of WASH5P mRNA	CTD	PMID:28991164
WASH5P	Human	indometacin	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of WASH5P mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of WASH5P mRNA	CTD	PMID:28628672
WASH5P	Human	N,N-diethyl-m-toluamide	decreases expression	EXP		6480464	DEET results in decreased expression of WASH5P mRNA	CTD	PMID:28991164
WASH5P	Human	N,N-diethyl-m-toluamide	multiple interactions	EXP		6480464	[fipronil co-treated with DEET] results in decreased expression of WASH5P mRNA	CTD	PMID:28991164
WASH5P	Human	ozone	multiple interactions	EXP		6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of WASH5P mRNA more ...	CTD	PMID:32699268
WASH5P	Human	rac-lactic acid	increases expression	EXP		6480464	Lactic Acid results in increased expression of WASH5P mRNA	CTD	PMID:30851411

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2-hydroxypropanoic acid (EXP)

3-isobutyl-1-methyl-7H-xanthine (EXP)

4,4'-sulfonyldiphenol (EXP)

acrolein (EXP)

acrylamide (EXP)

alpha-pinene (EXP)

antirheumatic drug (EXP)

benzo[a]pyrene (EXP)

bisphenol F (EXP)

dexamethasone (EXP)

dicrotophos (EXP)

doxorubicin (EXP)

fipronil (EXP)

indometacin (EXP)

N,N-diethyl-m-toluamide (EXP)

ozone (EXP)

rac-lactic acid (EXP)

References

Additional References at PubMed

PMID:14702039

Genomics

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	3059
Count of miRNA genes:	884
Interacting mature miRNAs:	1064
Transcripts:	ENST00000391654, ENST00000606546, ENST00000606554, ENST00000606592, ENST00000606728, ENST00000606872, ENST00000607444, ENST00000607556, ENST00000607633, ENST00000607872
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCh38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298499	UAE1_H	Urinary albumin excretion QTL 1 (human)	2.73	0.0009	Urinary albumin excretion	urine albumin:creatinine ratio (ACR)	19	1	16075902	Human
1643451	SLIPL6_H	Serum lipid level QTL 6 (human)	2.19	0.0008	Lipid level		19	1	16075902	Human
1581534	BP76_H	Blood pressure QTL 76 (human)	2	0.001	Blood pressure	pulse pressure	19	1	16075902	Human
1581535	BP65_H	Blood pressure QTL 65 (human)	3.1	0.001	Blood pressure	pulse pressure	19	1	16075902	Human
2314591	INSUL4_H	Insulin level QTL 4 (human)	3.8	0.000038	Insulin level	fasting	19	1	16075902	Human
1298476	BP3_H	Blood pressure QTL 3 (human)	2.4		Blood pressure	systolic	19	1	16075902	Human

Markers in Region

REN94418

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	16	73,597 - 73,849	UniSTS	GRCh37
Build 36	16	13,597 - 13,849	RGD	NCBI36
Celera	X	155,402,216 - 155,402,468	RGD
Cytogenetic Map	Y	q12	UniSTS
Cytogenetic Map	19	p13.3	UniSTS
Cytogenetic Map	16	p13.3	UniSTS
Cytogenetic Map	X	q28	UniSTS
HuRef	X	143,728,486 - 143,728,738	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system
1201	2214	2782	2204	4509	1436	1719	404	1369	242	1963	6007	5793	3567	528	1426	1232	162

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_033266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC008993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK308635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000631796

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	65,820 - 70,971 (-)	Ensembl

Ensembl Acc Id:

ENST00000631994

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	66,378 - 71,566 (-)	Ensembl

Ensembl Acc Id:

ENST00000632089

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	65,792 - 71,003 (-)	Ensembl

Ensembl Acc Id:

ENST00000632292

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	70,652 - 71,626 (-)	Ensembl

Ensembl Acc Id:

ENST00000632496

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	65,820 - 70,990 (-)	Ensembl

Ensembl Acc Id:

ENST00000632506

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	60,951 - 70,976 (-)	Ensembl

Ensembl Acc Id:

ENST00000633703

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	63,821 - 70,951 (-)	Ensembl

Ensembl Acc Id:

ENST00000633719

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	62,113 - 66,524 (-)	Ensembl

Ensembl Acc Id:

ENST00000633742

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	66,320 - 66,492 (-)	Ensembl

Ensembl Acc Id:

ENST00000634023

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	64,779 - 72,315 (-)	Ensembl

Ensembl Acc Id:

ENST00000816397

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	65,820 - 72,334 (-)	Ensembl

Ensembl Acc Id:

ENST00000816398

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	64,775 - 70,973 (-)	Ensembl

Ensembl Acc Id:

ENST00000816399

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	64,775 - 70,968 (-)	Ensembl

Ensembl Acc Id:

ENST00000816400

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	65,820 - 70,974 (-)	Ensembl

Ensembl Acc Id:

ENST00000816401

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	65,820 - 70,966 (-)	Ensembl

Ensembl Acc Id:

ENST00000816402

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	65,820 - 70,965 (-)	Ensembl

Ensembl Acc Id:

ENST00000816403

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	65,824 - 70,963 (-)	Ensembl

Ensembl Acc Id:

ENST00000816404

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	65,822 - 70,961 (-)	Ensembl

Ensembl Acc Id:

ENST00000816405

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	65,824 - 70,957 (-)	Ensembl

Ensembl Acc Id:

ENST00000816406

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	68,160 - 70,954 (-)	Ensembl

RefSeq Acc Id:

NR_033266

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	60,951 - 70,966 (-)	NCBI
GRCh37	19	60,951 - 70,966 (-)	RGD
Celera	19	155,394,459 - 155,407,034 (+)	RGD
HuRef	19	143,732,815 - 143,733,266 (+)	RGD
CHM1_1	15	102,352,063 - 102,362,078 (+)	NCBI
T2T-CHM13v2.0	19	11,934 - 21,953 (-)	NCBI

Sequence:

show sequence

GGAAGCGGCGGCGGGAGCTTCCGGGAGGGCGGCTCGCAGGCACCATGACTCCTGTGAGGATGCA
GCACTCCCTGGCAGGTCAGACCTATGCCGTGCCCTTCATCCAGCCAGACCTGCGGCGAGAGGAG
GCCGTCCAGCAGATGGCGGATGCCCTGCAGTACCTGCAGAAGGTCTCTGGAGACATCTTCAGCA
GCTCCATCTTGTCTACAAGATTTTGTTAGAAGCCGTCAAAATCCTGCTGACTCGAGATGCGCTG
TGGTGCATGTTTTCCCCGGGCACAGCAGGCTAATAATCCTGTTACAAAGAGAAATGCTGTACAT
TTCGAGCAGTGCTGGCCCCTGGGACTCACCGTGGCCTTTTCTAAGTGCTTACAGACTCTCTGTT
TAATAATCCATTCCAGAAATTTTCCAGGGCTCATTGTTGAGCTTGGTGTTCGCAACTTTGAGTG
ATCAGCCCTTCTCCTTTGTGGGAGCACCAGGACAGAGCAGCCTTTGTCCCTCCCCAGTCTCAGT
TCCCTCCCACTGCCCCTGTGGACCTCGAATGCAGAGCTTATGCACCTACCGAAGGTCGTGTCAG
CACCCAAGGCAGAACGAGGCTGCCCTGGGAACTAGGGTCAATTAAGACAGCTTGTGCTGGAGGA
CCCTTTACAGCAGATGAAGGCCTCTCCCCAGCCAGAAAAGATGGAGCACACGCTGGGTGGTGGC
CCCGCTTCCTCACTGGAAGGAGATGGTGCTCTTCTTTTTTCTTTCTGAATTGTGGCCACCTTCA
TACCAGTCTGTCATGGAACACTTAAGTCGCTTGAGTGCCTGCTGGTACTCCCAGCCCTGCCATG
CCTGAGCCCCCTGCACACAAGGAGCCAGGAGTAATCAGGGCAGACCCTTTAGGGCACGGGGACT
TCTGGATTGTGAAATTGGCTCTCTGGGGGCCAAGGCCTTCTAACGTTGGTGGAAGTGGCTTTGG
CTTATTGGGTCGGATTCTAGGCCATTCATTCCAACCTTTAGAGACATCCCAGCTTTCCCTAGCC
CAGAGTCTGCAGCCCCTCCACCATCCCACATCCTCCCCCTCCCTTTCCTCATGAACCCCAGTCG
CGCCTCTGCCTTCTCAAACCCCTCCACCATCCCACACCCTCCTCCTGCC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	WASH5P	COSMIC
Ensembl Genes	ENSG00000282458	Ensembl
	ENSG00000292982	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000632506	ENTREZGENE
GTEx	ENSG00000282458	GTEx
	ENSG00000292982	GTEx
HGNC ID	HGNC:33884	ENTREZGENE
Human Proteome Map	WASH5P	Human Proteome Map
NCBI Gene	WASH5P	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-02-19	WASH5P	WASP family homolog 5, pseudogene		WAS protein family homolog 5, pseudogene	Symbol and/or name change	5135510	APPROVED
2018-06-12	WASH5P	WAS protein family homolog 5, pseudogene		WAS protein family homolog 5 pseudogene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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