Gm2199 (predicted gene 2199) - Rat Genome Database

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Gene: Gm2199 (predicted gene 2199) Mus musculus
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Symbol: Gm2199
Name: predicted gene 2199
RGD ID: 2299816
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 100039506; predicted gene, 100039506
Related Functional Gene: Mtch2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39581,048,475 - 81,049,503 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl581,048,597 - 81,049,470 (-)EnsemblGRCm39 Ensembl
GRCm38580,900,628 - 80,901,656 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl580,900,750 - 80,901,623 (-)EnsemblGRCm38mm10GRCm38
MGSCv37581,329,653 - 81,330,672 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36581,329,632 - 81,330,672 (-)NCBIMGSCv36mm8
Celera578,158,465 - 78,159,484 (-)NCBICelera
Cytogenetic Map5DNCBI
cM Map542.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:29789577  



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Variants in Gm2199
65 total Variants

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:108
Interacting mature miRNAs:111
Transcripts:ENSMUST00000119065
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 48 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
10043993Hbnr10_mHeligmosomoides bakeri nematode resistance 10 (mouse)Not determined572418876106419011Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse

1 to 10 of 48 rows





RefSeq Transcripts NG_016785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000119065
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl581,048,597 - 81,049,470 (-)Ensembl
GRCm38.p6 Ensembl580,900,750 - 80,901,623 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000083829 Ensembl, ENTREZGENE
MGD MGI:3780369 ENTREZGENE
NCBI Gene 100039384 ENTREZGENE
PhenoGen Gm2199 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Gm2199  predicted gene 2199  100039506  predicted gene, 100039506  Data merged from RGD:2299794 737654 PROVISIONAL
2011-07-27 Gm2199  predicted gene 2199  100039384  predicted gene, 100039384  Symbol and/or name change 5135510 APPROVED