Ywhaq-ps2 (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2) - Rat Genome Database

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Gene: Ywhaq-ps2 (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2) Mus musculus
Analyze
Symbol: Ywhaq-ps2
Name: tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2
RGD ID: 2295974
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: Gm13819; tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide, pseudogene
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,966,614 - 114,967,291 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5114,966,634 - 114,967,276 (-)EnsemblGRCm39 Ensembl
GRCm385114,828,553 - 114,829,230 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,828,573 - 114,829,215 (-)EnsemblGRCm38mm10GRCm38
MGSCv375115,278,582 - 115,279,287 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,088,888 - 115,090,600 (-)NCBIMGSCv36mm8
Celera5111,926,629 - 111,927,334 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Ywhaq-ps2
34 total Variants

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:116
Interacting mature miRNAs:118
Transcripts:ENSMUST00000117738
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 54 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse

1 to 10 of 54 rows





GenBank Nucleotide AC116500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000117738
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,966,634 - 114,967,276 (-)Ensembl
GRCm38.p6 Ensembl5114,828,573 - 114,829,215 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000082052 Ensembl, ENTREZGENE
MGD MGI:3650308 ENTREZGENE
NCBI Gene 664895 ENTREZGENE
PhenoGen Ywhaq-ps2 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-23 Ywhaq-ps2  tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2    tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide, pseudogene  Symbol and/or name change 5135510 APPROVED
2014-05-21 Ywhaq-ps2  tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide, pseudogene  Gm13819  predicted gene 13819  Symbol and/or name change 5135510 APPROVED