Gm7324 (predicted gene 7324) - Rat Genome Database

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Gene: Gm7324 (predicted gene 7324) Mus musculus
Analyze
No known orthologs.
Symbol: Gm7324
Name: predicted gene 7324
RGD ID: 2295902
MGI Page MGI
Description: Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be part of supraspliceosomal complex. Human ortholog(s) of this gene implicated in X-linked mental retardation Gustavson type and syndromic X-linked intellectual disability Shashi type. Orthologous to human RBMX (RNA binding motif protein X-linked).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG652988; Rbmxrt pseudogene; Rbmxrtp; RNA binding motif protein, X chromosome pseudogene
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391443,951,191 - 43,952,827 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1443,935,285 - 43,952,835 (+)EnsemblGRCm39 Ensembl
GRCm381443,713,734 - 43,715,370 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1443,697,828 - 43,715,378 (+)EnsemblGRCm38mm10GRCm38
MGSCv371444,291,399 - 44,293,035 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361442,593,600 - 42,595,209 (+)NCBIMGSCv36mm8
Celera1438,884,281 - 38,885,917 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1422.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm7324Mousepositive regulation of mRNA splicing, via spliceosome involved_inIBAPANTHER:PTN000391532 more ...2290270 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm7324Mousespliceosomal complex part_ofIBAPANTHER:PTN000391532 more ...2290270 GO_CentralGO_REF:0000033
Gm7324Mousesupraspliceosomal complex part_ofISORbmxl1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm7324MouseRNA binding enablesISORbmxl1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gm7324MouseRNA binding enablesIBAPANTHER:PTN000391532 more ...2290270 GO_CentralGO_REF:0000033

PMID:21873635  



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Variants in Gm7324
7 total Variants

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENSMUST00000094051
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse

1 to 10 of 27 rows





RefSeq Transcripts NM_001436319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000094051   ⟹   ENSMUSP00000154633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1443,951,189 - 43,952,835 (+)Ensembl
GRCm38.p6 Ensembl1443,713,732 - 43,715,378 (+)Ensembl
Ensembl Acc Id: ENSMUST00000228507   ⟹   ENSMUSP00000154111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1443,935,285 - 43,951,449 (+)Ensembl
GRCm38.p6 Ensembl1443,697,828 - 43,713,992 (+)Ensembl
Protein RefSeqs NP_001423248 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000154111.2
  ENSMUSP00000154633.2
Ensembl Acc Id: ENSMUSP00000154633   ⟸   ENSMUST00000094051
Ensembl Acc Id: ENSMUSP00000154111   ⟸   ENSMUST00000228507
RRM

Name Modeler Protein Id AA Range Protein Structure
AF-A0A2I3BRL8-F1-model_v2 AlphaFold A0A2I3BRL8 1-388 view protein structure



1 to 22 of 22 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000049235 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000094051.6 UniProtKB/TrEMBL
  ENSMUST00000228507.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM UniProtKB/TrEMBL
  RBM1CTR UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/TrEMBL
MGD MGI:3646999 ENTREZGENE
NCBI Gene 652988 ENTREZGENE
PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/TrEMBL
Pfam RBM1CTR UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PhenoGen Gm7324 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A2I3BQC0_MOUSE UniProtKB/TrEMBL
  A0A2I3BRL8_MOUSE UniProtKB/TrEMBL
1 to 22 of 22 rows