Cd63-ps (CD63 antigen, pseudogene) - Rat Genome Database

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Gene: Cd63-ps (CD63 antigen, pseudogene) Mus musculus
Analyze
Symbol: Cd63-ps
Name: CD63 antigen, pseudogene
RGD ID: 2295759
MGI Page MGI
Description:
Type: protein-coding (Ensembl: transcribed_processed_pseudogene)
Previously known as: Cd63-r; EG626721; Gm6699
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391850,267,796 - 50,268,667 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1850,267,862 - 50,268,578 (+)EnsemblGRCm39 Ensembl
GRCm381850,134,729 - 50,135,600 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1850,134,726 - 50,135,600 (+)EnsemblGRCm38mm10GRCm38
MGSCv371850,294,383 - 50,295,254 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361850,260,056 - 50,260,948 (+)NCBIMGSCv36mm8
Celera1851,466,943 - 51,468,035 (+)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1824.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:7590978   PMID:8661157   PMID:9417917   PMID:10444329   PMID:11110696  


Genomics

Variants

.
Variants in Cd63-ps
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:119
Interacting mature miRNAs:124
Transcripts:ENSMUST00000145417, ENSMUST00000154992, ENSMUST00000163860
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
10412184Sstapa1_mSuseptibility to Staphylococus aureus infection 1 (mouse)Not determined184654154657590708Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences

Ensembl Acc Id: ENSMUST00000145417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1850,267,793 - 50,268,667 (+)Ensembl
GRCm38.p6 Ensembl1850,134,726 - 50,135,600 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1850,267,862 - 50,268,578 (+)Ensembl
GRCm38.p6 Ensembl1850,134,795 - 50,135,511 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085939 Ensembl
MGD MGI:105972 ENTREZGENE
NCBI Gene Cd63-rs1 ENTREZGENE
PhenoGen Cd63-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Cd63-ps  CD63 antigen, pseudogene  Cd63-rs1  CD63 antigen, related sequence 1  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 Cd63-rs1  CD63 antigen, related sequence 1  Cd63-rs1  Cd63 antigen, related sequence 1  Symbol and/or name change 5135510 APPROVED
2024-08-21 Cd63-rs1  Cd63 antigen, related sequence 1  Cd63-ps  CD63 antigen, pseudogene  Symbol and/or name change 5135510 APPROVED
2014-09-17 Cd63-ps  CD63 antigen, pseudogene  Gm6699  predicted gene 6699  Symbol and/or name change 5135510 APPROVED