Gm11949 (predicted gene 11949) - Rat Genome Database

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Gene: Gm11949 (predicted gene 11949) Mus musculus
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Symbol: Gm11949
Name: predicted gene 11949
RGD ID: 2295345
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Map1lc3-5
Related Functional Gene: Map1lc3b  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,575,235 - 3,575,906 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,575,477 - 3,575,848 (-)EnsemblGRCm39 Ensembl
GRCm38113,625,235 - 3,625,906 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,625,477 - 3,625,848 (-)EnsemblGRCm38mm10GRCm38
MGSCv37113,525,219 - 3,525,903 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,525,219 - 3,525,903 (-)NCBIMGSCv36mm8
Celera114,116,409 - 4,117,093 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm11949
11 total Variants

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:95
Interacting mature miRNAs:96
Transcripts:ENSMUST00000117640
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse

1 to 10 of 14 rows





RefSeq Transcripts NG_005193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL691413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY392032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000117640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl113,575,477 - 3,575,848 (-)Ensembl
GRCm38.p6 Ensembl113,625,477 - 3,625,848 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000084211 Ensembl
MGD MGI:3650314 ENTREZGENE
NCBI Gene 382473 ENTREZGENE
PhenoGen Gm11949 PhenoGen