Gm10086 (predicted pseudogene 10086) - Rat Genome Database

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Gene: Gm10086 (predicted pseudogene 10086) Mus musculus
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Symbol: Gm10086
Name: predicted pseudogene 10086
RGD ID: 2295148
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000060730; hypothetical protein LOC100042557
Related Functional Gene: Rpl34  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,664,975 - 108,665,436 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,665,045 - 108,665,398 (+)EnsemblGRCm39 Ensembl
GRCm385108,517,109 - 108,517,570 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,517,179 - 108,517,532 (+)EnsemblGRCm38mm10GRCm38
MGSCv375108,946,198 - 108,946,551 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,946,145 - 108,946,610 (+)NCBIMGSCv36mm8
Celera5105,638,634 - 105,639,095 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:12477932  



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Variants in Gm10086
28 total Variants

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSMUST00000136334
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 62 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse

1 to 10 of 62 rows






Ensembl Acc Id: ENSMUST00000136334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,665,045 - 108,665,398 (+)Ensembl
GRCm38.p6 Ensembl5108,517,179 - 108,517,532 (+)Ensembl
RefSeq Acc Id: XM_001478936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv375108,946,198 - 108,946,551 (+)RGD
GenBank Protein EDL20108 (Get FASTA)   NCBI Sequence Viewer  



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000060730 Ensembl
MGD MGI:3642342 ENTREZGENE
NCBI Gene 100042557 ENTREZGENE
PhenoGen Gm10086 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm10086  predicted pseudogene 10086  Gm10086  predicted gene 10086  Symbol and/or name change 5135510 APPROVED