Gm12273 (predicted gene 12273) - Rat Genome Database

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Gene: Gm12273 (predicted gene 12273) Mus musculus
Analyze
Symbol: Gm12273
Name: predicted gene 12273
RGD ID: 2294679
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: D630015H07
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,841,743 - 61,843,560 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,841,741 - 61,843,562 (+)EnsemblGRCm39 Ensembl
GRCm381161,950,917 - 61,952,734 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,950,915 - 61,952,736 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,764,417 - 61,766,236 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,764,417 - 61,766,236 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm12273Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm12273Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm12273Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



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Variants in Gm12273
58 total Variants

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:91
Interacting mature miRNAs:92
Transcripts:ENSMUST00000137418
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 59 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse

1 to 10 of 59 rows





RefSeq Transcripts XR_388712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK052659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL646042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000137418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,841,741 - 61,843,562 (+)Ensembl
GRCm38.p6 Ensembl1161,950,915 - 61,952,736 (+)Ensembl
RefSeq Acc Id: XR_388712
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,841,743 - 61,843,560 (+)NCBI
GRCm381161,950,917 - 61,952,734 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000084805 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000137418 ENTREZGENE
MGD MGI:3650148 ENTREZGENE
NCBI Gene 327939 ENTREZGENE
PhenoGen Gm12273 PhenoGen
RNAcentral URS000077D28F RNACentral