NCL (nucleolin) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: NCL (nucleolin) Chlorocebus sabaeus
Analyze
Symbol: NCL
Name: nucleolin
RGD ID: 20866267
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA topoisomerase binding (inferred); identical protein binding (inferred); INVOLVED IN angiogenesis (inferred); cellular response to epidermal growth factor stimulus (inferred); cellular response to leukemia inhibitory factor (inferred); FOUND IN cell cortex (inferred); chromosome (inferred); cornified envelope (inferred)
Type: protein-coding
Latest Assembly: ChlSab1.1 Ensembl - Green Monkey 1.1 Assembly Ensembl
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl10117,477,904 - 117,486,774 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 18 60
Low 2
Below cutoff

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSCSAT00000004698   ⟹   ENSCSAP00000002943
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl10117,477,904 - 117,486,774 (-)Ensembl
Protein Sequences
Ensembl Protein ENSCSAP00000002943.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000002943   ⟸   ENSCSAT00000004698


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006660 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004698.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleolin_RRM1 UniProtKB/TrEMBL
  Nucleolin_RRM2 UniProtKB/TrEMBL
  Nucleolin_RRM3 UniProtKB/TrEMBL
  Nucleolin_RRM4 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/TrEMBL
PANTHER OS02G0815200 PROTEIN UniProtKB/TrEMBL
  OS02G0815200 PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0D9R2V4_CHLSB UniProtKB/TrEMBL