EBF3 (EBF transcription factor 3) - Rat Genome Database

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Gene: EBF3 (EBF transcription factor 3) Chlorocebus sabaeus
Analyze
Symbol: EBF3
Name: EBF transcription factor 3
RGD ID: 20866044
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN positive regulation of DNA-templated transcription (inferred); positive regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
Latest Assembly: ChlSab1.1 Ensembl - Green Monkey 1.1 Assembly Ensembl
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl9122,443,514 - 122,571,303 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 16 13 11
Below cutoff 20 6 45

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSCSAT00000002461   ⟹   ENSCSAP00000000769
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl9122,443,514 - 122,571,303 (-)Ensembl
Protein Sequences
Ensembl Protein ENSCSAP00000000769.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000000769   ⟸   ENSCSAT00000002461


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004432 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002461.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.4280 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  2.60.40.3180 UniProtKB/TrEMBL
InterPro COE_DBD UniProtKB/TrEMBL
  COE_DBD_sf UniProtKB/TrEMBL
  COE_HLH UniProtKB/TrEMBL
  COE_IPT UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_dom UniProtKB/TrEMBL
  Transcription_factor_COE UniProtKB/TrEMBL
  Transcription_factor_COE_CS UniProtKB/TrEMBL
PANTHER PTHR10747 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR COE3 UniProtKB/TrEMBL
Pfam COE1_DBD UniProtKB/TrEMBL
  COE1_HLH UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
PROSITE COE UniProtKB/TrEMBL
SMART IPT UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/TrEMBL
UniProt A0A0D9QWN0_CHLSB UniProtKB/TrEMBL