LOC101707360 (pleckstrin homology domain-containing family M member 2) - Rat Genome Database

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Gene: LOC101707360 (pleckstrin homology domain-containing family M member 2) Heterocephalus glaber
Analyze
Symbol: LOC101707360 (Ensembl: PLEKHM2)
Name: pleckstrin homology domain-containing family M member 2
RGD ID: 18936590
Description: ENCODES a protein that exhibits filamin binding (inferred); kinesin binding (inferred); metal ion binding (inferred); INVOLVED IN cell-cell adhesion (inferred); Golgi organization (inferred); lysosome localization (inferred); FOUND IN endosome membrane (inferred); focal adhesion (inferred); lysosomal membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fblim1; filamin binding LIM protein 1; filamin-binding LIM protein 1; pleckstrin homology and RUN domain containing M2; Plekhm2; Slc25a34; solute carrier family 25 member 34; Tmem82; transmembrane protein 82; uncharacterized protein LOC101707360
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247641,999,500 - 2,018,548 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla_female_1.0 EnsemblNW_0046247641,943,422 - 1,984,529 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247641,944,239 - 2,018,666 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004850338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004850339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004850346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013074179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021262858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01044555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01002137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH171561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000010125   ⟹   ENSHGLP00000010014
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247641,943,422 - 1,984,529 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000010126   ⟹   ENSHGLP00000010015
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247641,944,265 - 1,982,184 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000027144   ⟹   ENSHGLP00000026905
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247641,999,500 - 2,018,548 (+)Ensembl
RefSeq Acc Id: XM_004850338   ⟹   XP_004850395
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,944,315 - 1,982,189 (+)NCBI
RefSeq Acc Id: XM_004850339   ⟹   XP_004850396
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,944,315 - 1,982,189 (+)NCBI
RefSeq Acc Id: XM_004850346   ⟹   XP_004850403
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247642,000,101 - 2,018,664 (+)NCBI
RefSeq Acc Id: XM_013074179   ⟹   XP_012929633
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247642,001,372 - 2,018,664 (+)NCBI
RefSeq Acc Id: XM_021262849   ⟹   XP_021118508
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,944,239 - 2,018,659 (+)NCBI
RefSeq Acc Id: XM_021262850   ⟹   XP_021118509
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,944,239 - 2,018,659 (+)NCBI
RefSeq Acc Id: XM_021262851   ⟹   XP_021118510
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,944,239 - 2,018,659 (+)NCBI
RefSeq Acc Id: XM_021262852   ⟹   XP_021118511
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,944,239 - 2,018,659 (+)NCBI
RefSeq Acc Id: XM_021262853   ⟹   XP_021118512
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,944,239 - 2,018,658 (+)NCBI
RefSeq Acc Id: XM_021262854   ⟹   XP_021118513
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,944,239 - 2,018,658 (+)NCBI
RefSeq Acc Id: XM_021262855   ⟹   XP_021118514
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,944,239 - 1,992,078 (+)NCBI
RefSeq Acc Id: XM_021262856   ⟹   XP_021118515
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,975,165 - 2,018,666 (+)NCBI
RefSeq Acc Id: XM_021262857   ⟹   XP_021118516
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,978,901 - 2,018,666 (+)NCBI
RefSeq Acc Id: XM_021262858   ⟹   XP_021118517
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247641,986,489 - 2,018,666 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021118508   ⟸   XM_021262849
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021118509   ⟸   XM_021262850
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021118510   ⟸   XM_021262851
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021118511   ⟸   XM_021262852
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021118512   ⟸   XM_021262853
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021118513   ⟸   XM_021262854
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021118514   ⟸   XM_021262855
- Peptide Label: isoform X7
RefSeq Acc Id: XP_004850395   ⟸   XM_004850338
- Peptide Label: isoform X10
- UniProtKB: A0A0P6JX56 (UniProtKB/TrEMBL),   G5BRT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850396   ⟸   XM_004850339
- Peptide Label: isoform X11
- UniProtKB: G5BRT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118515   ⟸   XM_021262856
- Peptide Label: isoform X8
RefSeq Acc Id: XP_021118516   ⟸   XM_021262857
- Peptide Label: isoform X9
RefSeq Acc Id: XP_021118517   ⟸   XM_021262858
- Peptide Label: isoform X12
RefSeq Acc Id: XP_004850403   ⟸   XM_004850346
- Peptide Label: isoform X13
- UniProtKB: G5BRT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929633   ⟸   XM_013074179
- Peptide Label: isoform X13
- UniProtKB: G5BRT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026905   ⟸   ENSHGLT00000027144
RefSeq Acc Id: ENSHGLP00000010015   ⟸   ENSHGLT00000010126
RefSeq Acc Id: ENSHGLP00000010014   ⟸   ENSHGLT00000010125


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007190 Ensembl, ENTREZGENE
  ENSHGLG00000019134 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010125 ENTREZGENE
  ENSHGLT00000010126 ENTREZGENE
  ENSHGLT00000027144 ENTREZGENE
Gene3D-CATH 1.20.58.900 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  Cysteine Rich Protein UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  Run_dom UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/TrEMBL
  RUN_PLEKHM2 UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
KEGG Report hgl:101707360 UniProtKB/TrEMBL
NCBI Gene LOC101707360 ENTREZGENE
PANTHER FILAMIN-BINDING LIM PROTEIN 1 UniProtKB/TrEMBL
  PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 UniProtKB/TrEMBL
  PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 UniProtKB/TrEMBL
  ZYX102 PROTEIN UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  SSF140741 UniProtKB/TrEMBL
UniProt A0A0P6JX56 ENTREZGENE, UniProtKB/TrEMBL
  G5BRT2 ENTREZGENE, UniProtKB/TrEMBL
  G5BRT5 ENTREZGENE, UniProtKB/TrEMBL