LOC101701770 (protein SCO1 homolog, mitochondrial) - Rat Genome Database

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Gene: LOC101701770 (protein SCO1 homolog, mitochondrial) Heterocephalus glaber
Analyze
Symbol: LOC101701770 (Ensembl: SCO1)
Name: protein SCO1 homolog, mitochondrial
RGD ID: 18935885
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN copper ion homeostasis (ortholog); cyclooxygenase pathway (ortholog); gene expression (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); brain disease (ortholog); congenital myopathy 6 (ortholog); FOUND IN mitochondrial inner membrane (inferred); mitochondrion (inferred); myofibril (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SCO1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478613,036,426 - 13,053,210 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478613,038,384 - 13,053,250 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC101701770
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478613,036,426 - 13,053,210 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478613,038,384 - 13,053,250 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SCO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381710,672,474 - 10,697,533 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1710,672,474 - 10,698,375 (-)EnsemblGRCh38hg38GRCh38
GRCh371710,575,791 - 10,600,850 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361710,524,379 - 10,541,562 (-)NCBINCBI36Build 36hg18NCBI36
Build 341710,524,379 - 10,541,562NCBI
Celera1710,614,503 - 10,631,739 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef1710,483,694 - 10,500,930 (-)NCBIHuRef
CHM1_11710,593,847 - 10,611,094 (-)NCBICHM1_1
T2T-CHM13v2.01710,580,025 - 10,605,085 (-)NCBIT2T-CHM13v2.0
Sco1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391166,943,473 - 66,958,270 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1166,943,496 - 66,957,896 (+)EnsemblGRCm39 Ensembl
GRCm381167,052,600 - 67,067,444 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,052,670 - 67,067,070 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,866,172 - 66,880,942 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,868,834 - 66,883,637 (+)NCBIMGSCv36mm8
Celera1173,992,022 - 74,006,793 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.59NCBI
Sco1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81052,243,664 - 52,256,250 (+)NCBIGRCr8
mRatBN7.21051,744,656 - 51,757,246 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1051,744,656 - 51,757,237 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1056,400,719 - 56,413,172 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01055,890,679 - 55,903,132 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01051,401,050 - 51,413,510 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01053,595,854 - 53,608,437 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1053,595,854 - 53,608,435 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01053,346,887 - 53,359,470 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41053,751,335 - 53,763,923 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1050,927,764 - 50,940,347 (+)NCBICelera
Cytogenetic Map10q24NCBI
LOC102030058
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554676,519,873 - 6,537,753 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554676,519,873 - 6,535,321 (+)NCBIChiLan1.0ChiLan1.0
LOC100988585
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21963,020,386 - 63,070,290 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11767,830,389 - 67,881,266 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01740,923,397 - 40,973,382 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11745,703,642 - 45,720,520 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1745,703,642 - 45,720,520 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1745,670,405 - 45,685,641 (+)Ensemblpanpan1.1panPan2
SCO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1534,957,358 - 34,971,684 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl534,957,785 - 34,971,661 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha535,091,457 - 35,108,332 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0535,059,898 - 35,076,769 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl535,062,467 - 35,076,795 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1535,025,378 - 35,042,230 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0534,982,468 - 34,999,354 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0535,163,599 - 35,180,758 (-)NCBIUU_Cfam_GSD_1.0
LOC101974307
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560250,049,595 - 50,063,755 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365953,523,779 - 3,538,150 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365953,523,789 - 3,537,933 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1255,405,483 - 55,424,118 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11255,406,730 - 55,424,120 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21258,039,030 - 58,056,122 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11610,021,480 - 10,036,920 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605911,307,499 - 11,322,823 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000019168   ⟹   ENSHGLP00000018979
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478613,036,426 - 13,053,210 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000019169   ⟹   ENSHGLP00000018980
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478613,039,166 - 13,053,210 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000019170   ⟹   ENSHGLP00000018981
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478613,039,166 - 13,053,210 (-)Ensembl
RefSeq Acc Id: XM_004857543   ⟹   XP_004857600
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478613,038,384 - 13,053,250 (-)NCBI
RefSeq Acc Id: XM_004857544   ⟹   XP_004857601
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478613,038,384 - 13,053,250 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004857600 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857601 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018979
GenBank Protein JAN98550 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004857601   ⟸   XM_004857544
- Peptide Label: isoform X2
- UniProtKB: G5B5I6 (UniProtKB/TrEMBL),   A0AAX6PRB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857600   ⟸   XM_004857543
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J4W8 (UniProtKB/TrEMBL),   G5B5I6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000018979   ⟸   ENSHGLT00000019168
Ensembl Acc Id: ENSHGLP00000018981   ⟸   ENSHGLT00000019170
Ensembl Acc Id: ENSHGLP00000018980   ⟸   ENSHGLT00000019169


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013602 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019168 ENTREZGENE
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro SCO1/SenC UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
KEGG Report hgl:101701770 UniProtKB/TrEMBL
NCBI Gene LOC101701770 ENTREZGENE
PANTHER PROTEIN SCO1 HOMOLOG, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12151 UniProtKB/TrEMBL
Pfam SCO1-SenC UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A0P6J4W8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PRB2 ENTREZGENE, UniProtKB/TrEMBL
  G5B5I6 ENTREZGENE, UniProtKB/TrEMBL