Coq9 (coenzyme Q9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Coq9 (coenzyme Q9) Heterocephalus glaber
Analyze
Symbol: Coq9
Name: coenzyme Q9
RGD ID: 18935291
Description: ENCODES a protein that exhibits lipid binding (inferred); protein homodimerization activity (inferred); INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (ortholog); ubiquinone biosynthetic process (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coenzyme Q9 homolog; ubiquinone biosynthesis protein COQ9, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,615,215 - 28,630,667 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,614,589 - 28,630,774 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Coq9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,615,215 - 28,630,667 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,614,589 - 28,630,774 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COQ9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,447,479 - 57,461,270 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,447,425 - 57,461,270 (+)EnsemblGRCh38hg38GRCh38
GRCh371657,481,391 - 57,495,182 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,038,903 - 56,052,680 (+)NCBINCBI36Build 36hg18NCBI36
Celera1641,982,201 - 41,996,039 (+)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1643,348,984 - 43,362,835 (+)NCBIHuRef
CHM1_11658,889,397 - 58,903,241 (+)NCBICHM1_1
T2T-CHM13v2.01663,242,655 - 63,256,447 (+)NCBIT2T-CHM13v2.0
Coq9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,565,041 - 95,581,523 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,564,949 - 95,581,523 (+)EnsemblGRCm39 Ensembl
GRCm38894,838,413 - 94,854,895 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,838,321 - 94,854,895 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,362,317 - 97,378,795 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,727,546 - 97,744,024 (+)NCBIMGSCv36mm8
Celera899,162,261 - 99,179,505 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.89NCBI
Coq9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,172,943 - 10,185,960 (-)NCBIGRCr8
mRatBN7.21910,166,948 - 10,179,976 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,166,951 - 10,179,949 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,131,050 - 10,144,018 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,897,894 - 10,910,862 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,184,842 - 10,197,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,583,855 - 10,596,848 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,583,857 - 10,596,851 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,578,657 - 10,591,673 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,606,083 - 10,619,005 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1910,053,557 - 10,066,550 (-)NCBICelera
Cytogenetic Map19p13NCBI
Coq9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,081,390 - 15,094,441 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543315,081,390 - 15,094,441 (+)NCBIChiLan1.0ChiLan1.0
COQ9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,917,691 - 66,931,545 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,838,564 - 72,852,419 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,723,452 - 37,737,327 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,856,401 - 56,870,260 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,856,401 - 56,870,260 (+)Ensemblpanpan1.1panPan2
COQ9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,964,221 - 58,977,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,964,318 - 58,977,573 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,593,687 - 55,607,649 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,502,901 - 59,516,434 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,502,646 - 59,516,061 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,333,956 - 56,347,384 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,341,652 - 57,355,632 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,235,112 - 58,249,092 (-)NCBIUU_Cfam_GSD_1.0
Coq9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,071,474 - 50,086,451 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,502,681 - 9,516,936 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,502,638 - 9,517,601 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COQ9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,372,711 - 19,390,820 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,373,052 - 19,390,738 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,363,400 - 17,381,054 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COQ9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,378,467 - 43,393,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,378,539 - 43,392,384 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604732,826,053 - 32,840,619 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016079   ⟹   ENSHGLP00000015913
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474628,615,215 - 28,630,667 (-)Ensembl
RefSeq Acc Id: XM_021257003   ⟹   XP_021112662
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,614,589 - 28,630,774 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021112662 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015913
  ENSHGLP00000059242
  ENSHGLP00100061177
GenBank Protein JAO00972 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021112662   ⟸   XM_021257003
- UniProtKB: A0A0P6JCD6 (UniProtKB/TrEMBL),   G5AUE6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015913   ⟸   ENSHGLT00000016079


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011366 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100019143 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016079 ENTREZGENE
  ENSHGLT00000063601 UniProtKB/TrEMBL
  ENSHGLT00100082271 UniProtKB/TrEMBL
Gene3D-CATH Tetracycline Repressor, domain 2 UniProtKB/TrEMBL
InterPro COQ9 UniProtKB/TrEMBL
  COQ9_HTH UniProtKB/TrEMBL
  Ubiq_biosynth_COQ9 UniProtKB/TrEMBL
NCBI Gene Coq9 ENTREZGENE
PANTHER PTHR21427 UniProtKB/TrEMBL
  UBIQUINONE BIOSYNTHESIS PROTEIN COQ9, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam COQ9 UniProtKB/TrEMBL
  COQ9_N UniProtKB/TrEMBL
UniProt A0A0P6JCD6 ENTREZGENE, UniProtKB/TrEMBL
  G5AUE6 ENTREZGENE, UniProtKB/TrEMBL