Cacul1 (CDK2 associated cullin domain 1) - Rat Genome Database

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Gene: Cacul1 (CDK2 associated cullin domain 1) Heterocephalus glaber
Analyze
Symbol: Cacul1
Name: CDK2 associated cullin domain 1
RGD ID: 18934001
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN G1/S transition of mitotic cell cycle (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of protein kinase activity (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CDK2-associated and cullin domain-containing protein 1; leucine-rich alpha-2-glycoprotein; LRG1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473727,962,852 - 28,045,630 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cacul1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473727,962,852 - 28,045,630 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CACUL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810118,676,411 - 118,754,970 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10118,674,167 - 118,755,249 (-)EnsemblGRCh38hg38GRCh38
GRCh3710120,435,923 - 120,514,482 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610120,430,484 - 120,504,748 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410120,432,909 - 120,504,748NCBI
Celera10114,171,140 - 114,245,410 (-)NCBICelera
Cytogenetic Map10q26.11NCBI
HuRef10114,069,583 - 114,143,787 (-)NCBIHuRef
CHM1_110120,724,839 - 120,799,135 (-)NCBICHM1_1
T2T-CHM13v2.010119,571,544 - 119,650,196 (-)NCBIT2T-CHM13v2.0
Cacul1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391960,513,143 - 60,569,420 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1960,513,134 - 60,569,463 (-)EnsemblGRCm39 Ensembl
GRCm381960,524,696 - 60,581,023 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1960,524,696 - 60,581,025 (-)EnsemblGRCm38mm10GRCm38
MGSCv371960,600,599 - 60,656,926 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361960,582,529 - 60,635,643 (-)NCBIMGSCv36mm8
Celera1962,733,507 - 62,790,112 (-)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1956.52NCBI
Cacul1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81269,652,356 - 269,712,265 (-)NCBIGRCr8
mRatBN7.21259,666,335 - 259,726,249 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1259,668,516 - 259,726,082 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1267,874,593 - 267,932,168 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01274,580,618 - 274,638,194 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01267,232,451 - 267,289,954 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01281,814,226 - 281,874,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1281,816,407 - 281,874,511 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01289,155,710 - 289,215,343 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41267,131,708 - 267,190,496 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11267,342,793 - 267,401,581 (-)NCBI
Celera1255,312,090 - 255,369,447 (-)NCBICelera
Cytogenetic Map1q55NCBI
Cacul1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543123,242,959 - 23,319,434 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543123,242,959 - 23,319,440 (-)NCBIChiLan1.0ChiLan1.0
CACUL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28130,542,572 - 130,618,125 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110130,547,910 - 130,623,674 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010115,252,194 - 115,330,001 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110118,677,646 - 118,753,918 (-)NCBIpanpan1.1PanPan1.1panPan2
CACUL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12829,007,685 - 29,093,032 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2829,017,168 - 29,059,866 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2829,154,270 - 29,236,216 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02829,546,856 - 29,616,378 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2829,544,489 - 29,616,363 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12829,099,469 - 29,180,991 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02829,116,715 - 29,198,336 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02829,311,895 - 29,393,678 (-)NCBIUU_Cfam_GSD_1.0
Cacul1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721317,267,231 - 17,332,939 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364868,232,818 - 8,293,615 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364868,230,942 - 8,294,018 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACUL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14128,681,907 - 128,749,020 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114128,681,905 - 128,749,105 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214140,194,184 - 140,220,475 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CACUL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19111,483,274 - 111,551,799 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9111,488,333 - 111,551,500 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604872,746,805 - 72,815,329 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004838838   ⟹   XP_004838895
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473727,962,852 - 28,045,630 (+)NCBI
RefSeq Acc Id: XM_004838839   ⟹   XP_004838896
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473727,963,287 - 28,045,630 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004838895 (Get FASTA)   NCBI Sequence Viewer  
  XP_004838896 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013943
GenBank Protein JAO01480 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004838895   ⟸   XM_004838838
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004838896   ⟸   XM_004838839
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009961 ENTREZGENE
Ensembl Transcript ENSHGLT00000014086 ENTREZGENE
NCBI Gene Cacul1 ENTREZGENE