Zbed6 (zinc finger BED-type containing 6) - Rat Genome Database

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Gene: Zbed6 (zinc finger BED-type containing 6) Heterocephalus glaber
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Symbol: Zbed6
Name: zinc finger BED-type containing 6
RGD ID: 18933904
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of muscle cell differentiation (ortholog); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN centriolar satellite (ortholog); cytoplasm (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger BED domain-containing protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248077,158,405 - 7,165,500 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbed6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248077,158,405 - 7,165,500 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZBED6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,795,623 - 203,854,124 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,795,623 - 203,854,124 (+)EnsemblGRCh38hg38GRCh38
GRCh371203,764,751 - 203,823,252 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1176,897,113 - 176,900,052 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,932,199 - 174,935,138 (+)NCBIHuRef
CHM1_11205,190,192 - 205,193,131 (+)NCBICHM1_1
T2T-CHM13v2.01203,058,813 - 203,118,077 (+)NCBIT2T-CHM13v2.0
Zbed6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,547,606 - 133,589,112 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,547,678 - 133,589,056 (-)EnsemblGRCm39 Ensembl
GRCm381133,655,879 - 133,660,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,655,879 - 133,660,885 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,619,940 - 133,661,318 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,552,456 - 135,557,462 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,478,882 - 135,488,939 (-)NCBIMGSCv36mm8
Celera1136,271,173 - 136,276,179 (-)NCBICelera
Cytogenetic Map1E4NCBI
Zbed6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81347,659,269 - 47,665,540 (-)NCBIGRCr8
mRatBN7.21345,107,253 - 45,113,524 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,071,718 - 45,114,009 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1347,716,568 - 47,722,839 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,004,645 - 49,010,916 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,269,202 - 46,275,473 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01350,196,143 - 50,211,670 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01355,251,587 - 55,254,843 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,579,830 - 46,584,923 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1345,441,385 - 45,444,641 (-)NCBICelera
Cytogenetic Map13q13NCBI
Zbed6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,680,253 - 39,683,192 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,679,365 - 39,683,454 (+)NCBIChiLan1.0ChiLan1.0
ZBED6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2145,575,140 - 45,579,236 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1145,539,979 - 45,543,291 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01179,400,520 - 179,405,501 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11183,690,250 - 183,694,195 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1183,691,160 - 183,694,099 (+)Ensemblpanpan1.1panPan2
ZBED6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138461,394 - 467,894 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha38557,150 - 562,163 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.038457,185 - 462,198 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.138454,051 - 459,064 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.038844,412 - 849,425 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0381,058,599 - 1,063,615 (+)NCBIUU_Cfam_GSD_1.0
Zbed6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934471,652,941 - 71,667,067 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936567897,053 - 899,992 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936567895,758 - 901,684 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBED6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12525,541,014 - 25,547,258 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2525,543,414 - 25,546,344 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605526,317,385 - 26,322,021 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021242447   ⟹   XP_021098106
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248077,158,405 - 7,165,465 (-)NCBI
RefSeq Acc Id: XM_021242448   ⟹   XP_021098107
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248077,158,405 - 7,165,500 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021098106 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098107 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAN97362 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021098107   ⟸   XM_021242448
- UniProtKB: A0A0P6JTY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098106   ⟸   XM_021242447
- UniProtKB: A0A0P6JTY7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
InterPro HATC_C_dom UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  Zinc_finger_BED UniProtKB/TrEMBL
  Znf_BED UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene Zbed6 ENTREZGENE
PANTHER FINGER PROTEIN, PUTATIVE-RELATED UniProtKB/TrEMBL
  ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
Pfam Dimer_Tnp_hAT UniProtKB/TrEMBL
  zf-BED UniProtKB/TrEMBL
PROSITE ZF_BED UniProtKB/TrEMBL
SMART ZnF_BED UniProtKB/TrEMBL
Superfamily-SCOP Hermes dimerisation domain UniProtKB/TrEMBL
  SSF53098 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0P6JTY7 ENTREZGENE, UniProtKB/TrEMBL