Minar1 (membrane integral NOTCH2 associated receptor 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Minar1 (membrane integral NOTCH2 associated receptor 1) Heterocephalus glaber
Analyze
Symbol: Minar1
Name: membrane integral NOTCH2 associated receptor 1
RGD ID: 18932659
Description: INVOLVED IN negative regulation of angiogenesis (ortholog); negative regulation of cell growth (ortholog); negative regulation of neuron projection development (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN endomembrane system (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kiaa1024; UPF0258 protein; UPF0258 protein KIAA1024 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624941533,301 - 544,122 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624941514,555 - 550,546 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Minar1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624941533,301 - 544,122 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624941514,555 - 550,546 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MINAR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381579,411,400 - 79,472,304 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1579,432,336 - 79,472,304 (+)EnsemblGRCh38hg38GRCh38
GRCh371579,724,678 - 79,764,646 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361577,511,913 - 77,551,697 (+)NCBINCBI36Build 36hg18NCBI36
Celera1556,661,717 - 56,701,948 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1556,483,207 - 56,522,880 (+)NCBIHuRef
CHM1_11579,842,913 - 79,882,072 (+)NCBICHM1_1
T2T-CHM13v2.01577,274,741 - 77,335,653 (+)NCBIT2T-CHM13v2.0
Minar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39989,469,261 - 89,505,940 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl989,469,269 - 89,505,178 (-)EnsemblGRCm39 Ensembl
GRCm38989,587,208 - 89,623,887 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl989,587,216 - 89,623,125 (-)EnsemblGRCm38mm10GRCm38
MGSCv37989,484,867 - 89,517,824 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36989,387,922 - 89,420,879 (-)NCBIMGSCv36mm8
Celera989,204,680 - 89,237,575 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map947.24NCBI
Minar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8899,017,228 - 99,049,003 (-)NCBIGRCr8
mRatBN7.2890,137,374 - 90,169,152 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl890,137,374 - 90,169,137 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx895,803,111 - 95,834,842 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0894,002,320 - 94,034,051 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0891,858,259 - 91,889,861 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0896,970,556 - 97,008,687 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl896,977,537 - 96,985,558 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0896,472,931 - 96,505,359 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4894,488,164 - 94,500,780 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera889,682,948 - 89,720,695 (-)NCBICelera
Cytogenetic Map8q31NCBI
Minar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955533408,225 - 443,248 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955533408,285 - 443,217 (+)NCBIChiLan1.0ChiLan1.0
MINAR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21668,668,395 - 68,729,595 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11572,834,498 - 72,894,854 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01558,402,688 - 58,445,461 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11577,361,433 - 77,402,138 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1577,361,433 - 77,402,124 (+)Ensemblpanpan1.1panPan2
MINAR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1357,735,935 - 57,770,369 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl357,738,708 - 57,748,284 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha360,394,633 - 60,426,748 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0358,171,579 - 58,203,698 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl358,174,344 - 58,202,572 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1357,668,551 - 57,700,655 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0357,876,044 - 57,908,149 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,226,978 - 58,257,039 (-)NCBIUU_Cfam_GSD_1.0
Minar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640119,725,504 - 119,759,266 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647137,573,464 - 37,610,833 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647137,573,475 - 37,607,329 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MINAR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl748,501,078 - 48,539,300 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1748,501,067 - 48,539,300 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2754,035,482 - 54,078,622 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MINAR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1263,916,183 - 3,958,664 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl263,920,064 - 3,932,619 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048137,904,452 - 137,944,652 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000000157   ⟹   ENSHGLP00000000127
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624941533,301 - 544,122 (+)Ensembl
RefSeq Acc Id: XM_004874806   ⟹   XP_004874863
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624941514,558 - 550,445 (+)NCBI
RefSeq Acc Id: XM_004874807   ⟹   XP_004874864
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624941514,555 - 550,445 (+)NCBI
RefSeq Acc Id: XM_013069271   ⟹   XP_012924725
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624941515,318 - 550,445 (+)NCBI
RefSeq Acc Id: XM_021252185   ⟹   XP_021107844
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624941514,917 - 550,445 (+)NCBI
RefSeq Acc Id: XM_021252186   ⟹   XP_021107845
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624941525,852 - 550,445 (+)NCBI
RefSeq Acc Id: XR_002392129
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624941514,558 - 550,546 (+)NCBI
RefSeq Acc Id: XR_002392130
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624941514,557 - 543,949 (+)NCBI
RefSeq Acc Id: XR_002392131
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624941514,558 - 543,929 (+)NCBI
RefSeq Acc Id: XR_002392132
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624941514,557 - 542,474 (+)NCBI
RefSeq Acc Id: XP_004874864   ⟸   XM_004874807
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004874863   ⟸   XM_004874806
- Peptide Label: isoform X1
- UniProtKB: G5BEX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107844   ⟸   XM_021252185
- Peptide Label: isoform X1
- UniProtKB: G5BEX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924725   ⟸   XM_013069271
- Peptide Label: isoform X1
- UniProtKB: G5BEX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107845   ⟸   XM_021252186
- Peptide Label: isoform X1
- UniProtKB: G5BEX8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000000127   ⟸   ENSHGLT00000000157


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000148 Ensembl, ENTREZGENE
  ENSHGLG00100008291 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000000157 ENTREZGENE
  ENSHGLT00100064666 UniProtKB/TrEMBL
InterPro MINAR1-like UniProtKB/TrEMBL
  MINAR1-like_C UniProtKB/TrEMBL
KEGG Report hgl:101701300 UniProtKB/TrEMBL
NCBI Gene Minar1 ENTREZGENE
PANTHER MAJOR INTRINSICALLY DISORDERED NOTCH2-BINDING RECEPTOR 1 UniProtKB/TrEMBL
  PTHR31530 UniProtKB/TrEMBL
Pfam MINAR1_C UniProtKB/TrEMBL
  MINAR1_N UniProtKB/TrEMBL
UniProt G5BEX8 ENTREZGENE, UniProtKB/TrEMBL