Phax (phosphorylated adaptor for RNA export) - Rat Genome Database

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Gene: Phax (phosphorylated adaptor for RNA export) Heterocephalus glaber
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Symbol: Phax
Name: phosphorylated adaptor for RNA export
RGD ID: 18932173
Description: ENCODES a protein that exhibits mRNA cap binding complex binding (ortholog); toxic substance binding (ortholog); INVOLVED IN RNA stabilization (ortholog); snRNA export from nucleus (ortholog); ASSOCIATED WITH adult-onset autosomal dominant demyelinating leukodystrophy (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN neuronal cell body (ortholog); nucleoplasm (ortholog); ribonucleoprotein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Phosphorylated adapter RNA export protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477415,006,852 - 15,029,177 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477415,006,115 - 15,029,252 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Phax
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477415,006,852 - 15,029,177 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477415,006,115 - 15,029,252 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PHAX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385126,600,947 - 126,627,252 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5126,600,925 - 126,627,252 (+)EnsemblGRCh38hg38GRCh38
GRCh375125,936,639 - 125,962,944 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365125,964,532 - 125,988,979 (+)NCBINCBI36Build 36hg18NCBI36
Celera5121,893,253 - 121,919,561 (+)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5121,127,851 - 121,154,385 (+)NCBIHuRef
CHM1_15125,369,204 - 125,395,562 (+)NCBICHM1_1
T2T-CHM13v2.05127,117,809 - 127,144,117 (+)NCBIT2T-CHM13v2.0
Phax
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391856,695,641 - 56,720,784 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1856,695,515 - 56,720,784 (+)EnsemblGRCm39 Ensembl
GRCm381856,562,569 - 56,587,712 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1856,562,443 - 56,587,712 (+)EnsemblGRCm38mm10GRCm38
MGSCv371856,722,223 - 56,747,366 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361856,698,383 - 56,712,872 (+)NCBIMGSCv36mm8
Celera1857,865,507 - 57,892,723 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1830.63NCBI
Phax
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81852,251,231 - 52,267,916 (+)NCBIGRCr8
mRatBN7.21850,053,133 - 50,069,823 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1850,053,023 - 50,069,823 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1852,091,311 - 52,108,152 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01852,799,358 - 52,816,201 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01850,597,179 - 50,614,024 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01851,662,294 - 51,678,981 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1851,662,294 - 51,678,980 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01850,857,303 - 50,873,990 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41852,344,828 - 52,361,518 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11852,390,322 - 52,406,983 (+)NCBI
Celera1848,198,291 - 48,214,972 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Phax
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555214,425,426 - 4,443,082 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555214,425,382 - 4,442,668 (+)NCBIChiLan1.0ChiLan1.0
PHAX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24121,915,810 - 121,942,809 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15120,055,373 - 120,082,372 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05122,005,976 - 122,032,326 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15127,776,529 - 127,803,619 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5127,776,529 - 127,803,619 (+)Ensemblpanpan1.1panPan2
PHAX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11115,884,765 - 15,900,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1115,887,960 - 15,899,119 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1114,678,546 - 14,693,176 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01116,611,019 - 16,625,667 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1116,610,877 - 16,625,667 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11115,342,333 - 15,356,962 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01115,188,496 - 15,203,128 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01115,784,863 - 15,799,490 (+)NCBIUU_Cfam_GSD_1.0
Phax
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213138,427,612 - 138,440,624 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365041,639 - 14,031 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365041,585 - 14,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHAX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2129,713,643 - 129,724,535 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12129,713,643 - 129,724,524 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22135,012,350 - 135,022,884 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHAX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12329,594,021 - 29,618,189 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2329,594,165 - 29,619,830 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603448,456,138 - 48,481,962 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000006689   ⟹   ENSHGLP00000006607
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477415,006,852 - 15,029,177 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000006690   ⟹   ENSHGLP00000006608
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477415,006,852 - 15,027,992 (-)Ensembl
RefSeq Acc Id: XM_004854456   ⟹   XP_004854513
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477415,006,115 - 15,029,252 (-)NCBI
RefSeq Acc Id: XM_021266253   ⟹   XP_021121912
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477415,006,115 - 15,029,252 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004854513 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121912 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB08855 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006607
RefSeq Acc Id: XP_004854513   ⟸   XM_004854456
- Peptide Label: isoform X2
- UniProtKB: G5BHU4 (UniProtKB/TrEMBL),   A0AAX6PMI1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121912   ⟸   XM_021266253
- Peptide Label: isoform X1
- UniProtKB: G5BHU4 (UniProtKB/TrEMBL),   A0AAX6TMC4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000006607   ⟸   ENSHGLT00000006689
Ensembl Acc Id: ENSHGLP00000006608   ⟸   ENSHGLT00000006690


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004831 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006689 ENTREZGENE
Gene3D-CATH 1.10.10.1440 UniProtKB/TrEMBL
InterPro PHAX UniProtKB/TrEMBL
  PHAX_RNA-binding_domain UniProtKB/TrEMBL
  PHAX_RNA-binding_sf UniProtKB/TrEMBL
KEGG Report hgl:101710598 UniProtKB/TrEMBL
NCBI Gene Phax ENTREZGENE
PANTHER PHOSPHORYLATED ADAPTER RNA EXPORT PROTEIN UniProtKB/TrEMBL
  PTHR13135 UniProtKB/TrEMBL
Pfam RNA_GG_bind UniProtKB/TrEMBL
UniProt A0AAX6PMI1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6TMC4 ENTREZGENE, UniProtKB/TrEMBL
  G5BHU4 ENTREZGENE, UniProtKB/TrEMBL