Spata3 (spermatogenesis associated 3) - Rat Genome Database

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Gene: Spata3 (spermatogenesis associated 3) Heterocephalus glaber
Analyze
Symbol: Spata3
Name: spermatogenesis associated 3
RGD ID: 18931886
Description: ASSOCIATED WITH Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatogenesis-associated protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248434,333,492 - 4,341,109 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Spata3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248434,333,492 - 4,341,109 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPATA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382230,996,121 - 231,020,109 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2230,990,324 - 231,025,055 (+)EnsemblGRCh38hg38GRCh38
GRCh372231,860,836 - 231,872,755 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,569,086 - 231,580,243 (+)NCBINCBI36Build 36hg18NCBI36
Build 342231,686,345 - 231,715,275NCBI
Celera2225,637,075 - 225,647,511 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2223,702,987 - 223,710,981 (+)NCBIHuRef
CHM1_12231,866,603 - 231,877,816 (+)NCBICHM1_1
T2T-CHM13v2.02231,479,391 - 231,504,484 (+)NCBIT2T-CHM13v2.0
Spata3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39185,945,728 - 85,957,683 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl185,944,538 - 85,957,680 (+)EnsemblGRCm39 Ensembl
GRCm38186,018,031 - 86,029,961 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,016,816 - 86,029,958 (+)EnsemblGRCm38mm10GRCm38
MGSCv37187,918,517 - 87,926,533 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36187,852,884 - 87,861,129 (+)NCBIMGSCv36mm8
Celera188,987,260 - 88,995,253 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.94NCBI
Spata3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8994,107,832 - 94,120,280 (+)NCBIGRCr8
mRatBN7.2986,660,352 - 86,672,272 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl986,659,784 - 86,672,272 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx995,078,332 - 95,090,262 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,206,835 - 100,218,765 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0998,587,532 - 98,599,654 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0993,029,766 - 93,042,631 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,030,714 - 93,042,631 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0992,760,028 - 92,771,945 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4984,726,151 - 84,738,071 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1984,913,079 - 84,917,571 (+)NCBI
Celera984,081,552 - 84,093,472 (+)NCBICelera
Cytogenetic Map9q35NCBI
Spata3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554534,435,819 - 4,453,138 (-)NCBIChiLan1.0ChiLan1.0
SPATA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213133,618,303 - 133,639,556 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B133,633,268 - 133,649,342 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B118,246,905 - 118,265,322 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B237,042,156 - 237,053,447 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B237,042,156 - 237,053,441 (+)Ensemblpanpan1.1panPan2
SPATA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12542,934,828 - 42,953,515 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2542,939,335 - 42,953,590 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2543,495,172 - 43,513,871 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02543,191,773 - 43,210,506 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2543,196,309 - 43,210,486 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12543,120,278 - 43,139,020 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02542,963,182 - 42,981,897 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02543,118,817 - 43,137,534 (+)NCBIUU_Cfam_GSD_1.0
LOC101976447
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303185,127,728 - 185,141,997 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365255,801,036 - 5,807,450 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365255,801,036 - 5,807,450 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15131,743,332 - 131,752,395 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115131,742,405 - 131,762,293 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215145,420,075 - 145,435,947 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110117,028,607 - 117,061,952 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10117,028,843 - 117,035,684 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604082,402,070 - 82,409,881 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004868043   ⟹   XP_004868100
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248434,333,492 - 4,341,109 (+)NCBI
RefSeq Acc Id: XM_021247078   ⟹   XP_021102737
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248434,333,492 - 4,340,999 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004868100 (Get FASTA)   NCBI Sequence Viewer  
  XP_021102737 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004868100   ⟸   XM_004868043
- UniProtKB: A0AAX6Q806 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102737   ⟸   XM_021247078
- UniProtKB: A0AAX6Q806 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
NCBI Gene Spata3 ENTREZGENE
UniProt A0AAX6Q806 ENTREZGENE, UniProtKB/TrEMBL