Shroom1 (shroom family member 1) - Rat Genome Database

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Gene: Shroom1 (shroom family member 1) Heterocephalus glaber
Analyze
Symbol: Shroom1
Name: shroom family member 1
RGD ID: 18931736
Description: ENCODES a protein that exhibits actin filament binding (ortholog); myosin II binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH COVID-19 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein Shroom1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473339,276,285 - 39,279,522 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473339,259,645 - 39,279,919 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Shroom1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473339,276,285 - 39,279,522 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473339,259,645 - 39,279,919 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SHROOM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385132,822,141 - 132,830,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5132,822,141 - 132,830,659 (-)EnsemblGRCh38hg38GRCh38
GRCh375132,157,833 - 132,166,339 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365132,185,911 - 132,189,901 (-)NCBINCBI36Build 36hg18NCBI36
Celera5128,287,848 - 128,296,605 (-)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5127,350,245 - 127,359,036 (-)NCBIHuRef
CHM1_15131,591,100 - 131,599,857 (-)NCBICHM1_1
T2T-CHM13v2.05133,341,872 - 133,351,357 (-)NCBIT2T-CHM13v2.0
Shroom1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,347,904 - 53,358,593 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,348,032 - 53,358,593 (+)EnsemblGRCm39 Ensembl
GRCm381153,457,093 - 53,467,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,457,205 - 53,467,766 (+)EnsemblGRCm38mm10GRCm38
MGSCv371153,270,707 - 53,281,257 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361153,300,653 - 53,310,721 (+)NCBIMGSCv36mm8
Celera1158,036,925 - 58,047,475 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.95NCBI
Shroom1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81038,121,971 - 38,134,832 (+)NCBIGRCr8
mRatBN7.21037,621,149 - 37,631,895 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1037,621,723 - 37,631,256 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01038,814,420 - 38,825,159 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1038,814,799 - 38,824,673 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01038,596,430 - 38,606,886 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41038,925,114 - 38,935,035 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11038,931,537 - 38,941,280 (+)NCBI
Celera1036,967,654 - 36,978,392 (+)NCBICelera
Cytogenetic Map10q22NCBI
Shroom1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554084,194,296 - 4,218,616 (-)NCBIChiLan1.0ChiLan1.0
SHROOM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24128,134,752 - 128,144,222 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15126,269,510 - 126,283,786 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05128,239,510 - 128,248,978 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15134,399,379 - 134,407,103 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5134,399,573 - 134,402,786 (-)Ensemblpanpan1.1panPan2
SHROOM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11121,115,103 - 21,120,934 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1121,116,370 - 21,119,806 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1119,916,746 - 19,922,542 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01121,901,164 - 21,906,961 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1121,900,828 - 21,905,977 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11120,619,577 - 20,625,373 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01120,467,256 - 20,473,056 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01121,109,757 - 21,115,552 (-)NCBIUU_Cfam_GSD_1.0
Shroom1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213115,374,117 - 115,382,281 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366472,371,612 - 2,385,045 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366472,371,673 - 2,385,037 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHROOM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2135,149,046 - 135,152,494 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12135,147,828 - 135,152,540 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22140,616,169 - 140,626,134 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SHROOM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12335,640,158 - 35,649,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2335,639,211 - 35,643,820 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603442,293,446 - 42,302,173 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000011576   ⟹   ENSHGLP00000011449
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473339,276,285 - 39,279,522 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000011577   ⟹   ENSHGLP00000011450
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473339,276,285 - 39,279,522 (+)Ensembl
RefSeq Acc Id: XM_004836598   ⟹   XP_004836655
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473339,272,487 - 39,279,919 (+)NCBI
RefSeq Acc Id: XM_013078972   ⟹   XP_012934426
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473339,259,645 - 39,279,919 (+)NCBI
RefSeq Acc Id: XM_021241411   ⟹   XP_021097070
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473339,272,486 - 39,279,919 (+)NCBI
RefSeq Acc Id: XM_021241416   ⟹   XP_021097075
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473339,271,986 - 39,279,919 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004836655 (Get FASTA)   NCBI Sequence Viewer  
  XP_012934426 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097070 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097075 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011450
RefSeq Acc Id: XP_012934426   ⟸   XM_013078972
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021097075   ⟸   XM_021241416
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021097070   ⟸   XM_021241411
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004836655   ⟸   XM_004836598
- Peptide Label: isoform X1
Ensembl Acc Id: ENSHGLP00000011450   ⟸   ENSHGLT00000011577
Ensembl Acc Id: ENSHGLP00000011449   ⟸   ENSHGLT00000011576


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008210 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011577 ENTREZGENE
NCBI Gene Shroom1 ENTREZGENE
UniProt A0AAX6R7U9_HETGA UniProtKB/TrEMBL
  A0AAX6RM03_HETGA UniProtKB/TrEMBL
  A0AAX6RNZ6_HETGA UniProtKB/TrEMBL