Argfx (arginine-fifty homeobox) - Rat Genome Database

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Gene: Argfx (arginine-fifty homeobox) Heterocephalus glaber
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Symbol: Argfx
Name: arginine-fifty homeobox
RGD ID: 18930980
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); Primary Lymphedema with Myelodysplasia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Chinchilla
Bonobo
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473126,589,149 - 26,590,917 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Argfx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473126,589,149 - 26,590,917 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ARGFX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383121,567,949 - 121,590,622 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3121,567,949 - 121,590,622 (+)EnsemblGRCh38hg38GRCh38
GRCh373121,286,796 - 121,309,469 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363122,769,468 - 122,792,159 (+)NCBINCBI36Build 36hg18NCBI36
Celera3119,696,469 - 119,719,151 (+)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3118,660,963 - 118,683,612 (+)NCBIHuRef
CHM1_13121,250,347 - 121,273,041 (+)NCBICHM1_1
T2T-CHM13v2.03124,287,873 - 124,310,525 (+)NCBIT2T-CHM13v2.0
Argfx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542720,965,012 - 20,969,269 (+)NCBIChiLan1.0ChiLan1.0
ARGFX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22119,524,974 - 119,547,624 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13119,529,751 - 119,552,401 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03118,670,123 - 118,692,774 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13125,580,060 - 125,602,363 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3125,582,839 - 125,598,563 (+)Ensemblpanpan1.1panPan2
Argfx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602129,481,583 - 129,496,123 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365368,025,883 - 8,040,423 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARGFX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12259,301,808 - 59,304,209 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041107,011,465 - 107,023,323 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021264704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01004281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021264704   ⟹   XP_021120363
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473126,589,149 - 26,590,917 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021120363 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021120363   ⟸   XM_021264704


Additional Information

Database Acc Id Source(s)
NCBI Gene Argfx ENTREZGENE