Stx17 (syntaxin 17) - Rat Genome Database

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Gene: Stx17 (syntaxin 17) Heterocephalus glaber
Analyze
Symbol: Stx17
Name: syntaxin 17
RGD ID: 18930361
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); protein phosphatase binding (ortholog); SNAP receptor activity (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagosome membrane docking (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH alopecia areata (ortholog); congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type II (ortholog); FOUND IN autophagosome (ortholog); autophagosome membrane (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: syntaxin-17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624825972,755 - 1,066,597 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624825967,493 - 1,066,513 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stx17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624825972,755 - 1,066,597 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624825967,493 - 1,066,513 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
STX17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38999,906,654 - 99,974,534 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl999,906,654 - 99,974,534 (+)EnsemblGRCh38hg38GRCh38
GRCh379102,668,936 - 102,736,816 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369101,708,736 - 101,776,639 (+)NCBINCBI36Build 36hg18NCBI36
Build 34999,748,520 - 99,812,176NCBI
Celera973,182,319 - 73,250,212 (+)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef972,267,951 - 72,335,844 (+)NCBIHuRef
CHM1_19102,815,379 - 102,883,282 (+)NCBICHM1_1
T2T-CHM13v2.09112,078,304 - 112,146,158 (+)NCBIT2T-CHM13v2.0
Stx17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39448,124,912 - 48,186,507 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl448,124,915 - 48,186,507 (+)EnsemblGRCm39 Ensembl
GRCm38448,124,906 - 48,186,507 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl448,124,915 - 48,186,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv37448,137,791 - 48,199,379 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36448,146,019 - 48,207,607 (+)NCBIMGSCv36mm8
Celera448,146,702 - 48,208,290 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.07NCBI
Stx17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8567,241,673 - 67,302,228 (+)NCBIGRCr8
mRatBN7.2562,446,138 - 62,506,108 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl562,446,187 - 62,504,451 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx564,420,535 - 64,476,984 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0566,239,828 - 66,296,277 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0566,209,293 - 66,265,742 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0563,866,346 - 63,926,276 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl563,870,432 - 63,922,730 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0568,383,379 - 68,443,631 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4564,798,013 - 64,854,400 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1564,803,051 - 64,859,439 (+)NCBI
Celera565,092,596 - 65,149,083 (-)NCBICelera
Cytogenetic Map5q22NCBI
Stx17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541925,674,771 - 25,741,355 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541925,674,771 - 25,741,357 (-)NCBIChiLan1.0ChiLan1.0
STX17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21139,489,585 - 39,557,503 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1939,491,422 - 39,559,874 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0970,989,913 - 71,058,374 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1999,107,182 - 99,174,648 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl999,107,243 - 99,168,801 (+)Ensemblpanpan1.1panPan2
STX17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11156,885,874 - 56,951,714 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1156,885,174 - 56,945,767 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1155,317,343 - 55,389,186 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01157,994,856 - 58,066,658 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1157,994,870 - 58,059,433 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11156,499,047 - 56,570,883 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01156,523,978 - 56,595,735 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01157,223,368 - 57,295,171 (+)NCBIUU_Cfam_GSD_1.0
Stx17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947171,776,982 - 171,833,664 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365248,324,569 - 8,376,114 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365248,324,562 - 8,381,244 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1241,657,506 - 241,765,783 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11241,657,463 - 241,785,270 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21269,887,848 - 270,007,730 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STX17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11239,457,816 - 39,525,138 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1239,462,367 - 39,516,531 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660353,024,110 - 3,101,121 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002957   ⟹   ENSHGLP00000002903
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624825972,755 - 1,066,597 (-)Ensembl
RefSeq Acc Id: XM_021244506   ⟹   XP_021100165
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624825967,493 - 1,066,513 (-)NCBI
RefSeq Acc Id: XM_021244507   ⟹   XP_021100166
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624825967,493 - 1,066,509 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021100165 (Get FASTA)   NCBI Sequence Viewer  
  XP_021100166 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021100165   ⟸   XM_021244506
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RXT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100166   ⟸   XM_021244507
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RSB8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002903   ⟸   ENSHGLT00000002957


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002172 Ensembl
NCBI Gene Stx17 ENTREZGENE
UniProt A0AAX6RSB8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RXT7 ENTREZGENE, UniProtKB/TrEMBL