Dqx1 (DEAQ-box RNA dependent ATPase 1) - Rat Genome Database

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Gene: Dqx1 (DEAQ-box RNA dependent ATPase 1) Heterocephalus glaber
Analyze
Symbol: Dqx1
Name: DEAQ-box RNA dependent ATPase 1
RGD ID: 18929762
Description: ENCODES a protein that exhibits helicase activity (inferred); RNA binding (inferred); ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN spliceosomal complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-dependent RNA helicase DQX1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474928,987,158 - 28,995,115 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474928,986,955 - 28,995,413 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dqx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474928,987,158 - 28,995,115 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474928,986,955 - 28,995,413 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DQX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,518,131 - 74,526,231 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,518,131 - 74,526,281 (-)EnsemblGRCh38hg38GRCh38
GRCh37274,745,258 - 74,753,358 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,598,766 - 74,606,826 (-)NCBINCBI36Build 36hg18NCBI36
Build 34274,656,914 - 74,664,973NCBI
Celera274,576,422 - 74,584,516 (-)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,481,519 - 74,489,669 (-)NCBIHuRef
CHM1_1274,674,654 - 74,682,804 (-)NCBICHM1_1
T2T-CHM13v2.0274,526,696 - 74,534,796 (-)NCBIT2T-CHM13v2.0
Dqx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,034,728 - 83,044,294 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,034,825 - 83,044,299 (+)EnsemblGRCm39 Ensembl
GRCm38683,057,747 - 83,067,313 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,057,844 - 83,067,318 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,007,838 - 83,017,213 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,023,502 - 83,032,877 (+)NCBIMGSCv36mm8
Celera685,040,433 - 85,049,819 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
Dqx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,121,216 - 117,130,315 (+)NCBIGRCr8
mRatBN7.24115,563,497 - 115,572,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4115,563,752 - 115,572,590 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,040,337 - 121,049,187 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04116,815,534 - 116,824,380 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04115,430,104 - 115,438,940 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04113,890,201 - 113,899,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4113,890,509 - 113,899,347 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04178,575,304 - 178,584,451 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,269,044 - 117,277,882 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4104,558,430 - 104,567,268 (+)NCBICelera
Cytogenetic Map4q34NCBI
Dqx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,262,502 - 11,271,680 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,262,502 - 11,271,680 (+)NCBIChiLan1.0ChiLan1.0
DQX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21251,863,264 - 51,871,951 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A51,865,746 - 51,874,705 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A74,584,797 - 74,592,872 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A76,091,027 - 76,099,109 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A76,091,342 - 76,099,110 (-)Ensemblpanpan1.1panPan2
DQX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,617,170 - 48,623,591 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,617,613 - 48,623,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,259,133 - 48,265,486 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01749,476,595 - 49,483,042 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1749,476,254 - 49,483,042 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11748,493,745 - 48,500,192 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01748,560,489 - 48,566,936 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,118,166 - 49,124,613 (+)NCBIUU_Cfam_GSD_1.0
Dqx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244062929,999,084 - 10,006,721 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936556730,716 - 738,562 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936556731,169 - 738,870 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DQX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,523,974 - 68,531,064 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,523,859 - 68,530,804 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,851,811 - 71,855,847 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DQX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,752,030 - 32,760,359 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1432,752,842 - 32,760,045 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604579,410,923 - 79,419,246 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013072207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01030237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000016932   ⟹   ENSHGLP00000016761
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474928,987,158 - 28,995,115 (+)Ensembl
RefSeq Acc Id: XM_013072207   ⟹   XP_012927661
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474928,986,955 - 28,995,413 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012927661 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012927661   ⟸   XM_013072207
- UniProtKB: A0AAX6QUQ0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000016761   ⟸   ENSHGLT00000016932


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011994 Ensembl
NCBI Gene Dqx1 ENTREZGENE
UniProt A0AAX6QUQ0 ENTREZGENE, UniProtKB/TrEMBL