DQX1 (DEAQ-box RNA dependent ATPase 1) - Rat Genome Database

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Gene: DQX1 (DEAQ-box RNA dependent ATPase 1) Canis lupus familiaris
Analyze
Symbol: DQX1
Name: DEAQ-box RNA dependent ATPase 1
RGD ID: 12413603
Description: ENCODES a protein that exhibits helicase activity (inferred); RNA binding (inferred); ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN spliceosomal complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-dependent RNA helicase DQX1; DEAQ box polypeptide 1 (RNA-dependent ATPase)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,617,170 - 48,623,591 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,617,613 - 48,623,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,259,133 - 48,265,486 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01749,476,595 - 49,483,042 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1749,476,254 - 49,483,042 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11748,493,745 - 48,500,192 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01748,560,489 - 48,566,936 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,118,166 - 49,124,613 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DQX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,617,170 - 48,623,591 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,617,613 - 48,623,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,259,133 - 48,265,486 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01749,476,595 - 49,483,042 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1749,476,254 - 49,483,042 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11748,493,745 - 48,500,192 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01748,560,489 - 48,566,936 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,118,166 - 49,124,613 (+)NCBIUU_Cfam_GSD_1.0
DQX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,518,131 - 74,526,231 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,518,131 - 74,526,281 (-)EnsemblGRCh38hg38GRCh38
GRCh37274,745,258 - 74,753,358 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,598,766 - 74,606,826 (-)NCBINCBI36Build 36hg18NCBI36
Build 34274,656,914 - 74,664,973NCBI
Celera274,576,422 - 74,584,516 (-)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,481,519 - 74,489,669 (-)NCBIHuRef
CHM1_1274,674,654 - 74,682,804 (-)NCBICHM1_1
T2T-CHM13v2.0274,526,696 - 74,534,796 (-)NCBIT2T-CHM13v2.0
Dqx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,034,728 - 83,044,294 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,034,825 - 83,044,299 (+)EnsemblGRCm39 Ensembl
GRCm38683,057,747 - 83,067,313 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,057,844 - 83,067,318 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,007,838 - 83,017,213 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,023,502 - 83,032,877 (+)NCBIMGSCv36mm8
Celera685,040,433 - 85,049,819 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
Dqx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,121,216 - 117,130,315 (+)NCBIGRCr8
mRatBN7.24115,563,497 - 115,572,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4115,563,752 - 115,572,590 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,040,337 - 121,049,187 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04116,815,534 - 116,824,380 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04115,430,104 - 115,438,940 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04113,890,201 - 113,899,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4113,890,509 - 113,899,347 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04178,575,304 - 178,584,451 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,269,044 - 117,277,882 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4104,558,430 - 104,567,268 (+)NCBICelera
Cytogenetic Map4q34NCBI
Dqx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,262,502 - 11,271,680 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,262,502 - 11,271,680 (+)NCBIChiLan1.0ChiLan1.0
DQX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21251,863,264 - 51,871,951 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A51,865,746 - 51,874,705 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A74,584,797 - 74,592,872 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A76,091,027 - 76,099,109 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A76,091,342 - 76,099,110 (-)Ensemblpanpan1.1panPan2
Dqx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244062929,999,084 - 10,006,721 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936556730,716 - 738,562 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936556731,169 - 738,870 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DQX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,523,974 - 68,531,064 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,523,859 - 68,530,804 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,851,811 - 71,855,847 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DQX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,752,030 - 32,760,359 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1432,752,842 - 32,760,045 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604579,410,923 - 79,419,246 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dqx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474928,987,158 - 28,995,115 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474928,986,955 - 28,995,413 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DQX1
37 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 2
Below cutoff 3 5 22 6 6 6 6 6 12 8 10 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005630519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038453107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000013395   ⟹   ENSCAFP00000012395
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1748,617,613 - 48,623,591 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845033040   ⟹   ENSCAFP00845025860
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1749,476,254 - 49,483,042 (+)Ensembl
RefSeq Acc Id: XM_038453107   ⟹   XP_038309035
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1748,259,133 - 48,265,486 (+)NCBI
RefSeq Acc Id: XM_038499069   ⟹   XP_038354997
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11748,493,745 - 48,500,192 (+)NCBI
RefSeq Acc Id: XM_038499070   ⟹   XP_038354998
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11748,493,838 - 48,500,192 (+)NCBI
RefSeq Acc Id: XM_038499071   ⟹   XP_038354999
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11748,493,792 - 48,500,192 (+)NCBI
RefSeq Acc Id: XM_038499072   ⟹   XP_038355000
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11748,493,838 - 48,500,192 (+)NCBI
RefSeq Acc Id: XM_038561657   ⟹   XP_038417585
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01749,118,166 - 49,124,613 (+)NCBI
RefSeq Acc Id: XM_038561658   ⟹   XP_038417586
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01749,118,259 - 49,124,613 (+)NCBI
RefSeq Acc Id: XM_038561659   ⟹   XP_038417587
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01749,118,213 - 49,124,613 (+)NCBI
RefSeq Acc Id: XM_038561660   ⟹   XP_038417588
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01749,118,259 - 49,124,613 (+)NCBI
RefSeq Acc Id: XM_038625698   ⟹   XP_038481626
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01748,560,489 - 48,566,936 (+)NCBI
RefSeq Acc Id: XM_038625699   ⟹   XP_038481627
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01748,560,582 - 48,566,936 (+)NCBI
RefSeq Acc Id: XM_038625700   ⟹   XP_038481628
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01748,560,536 - 48,566,936 (+)NCBI
RefSeq Acc Id: XM_038625701   ⟹   XP_038481629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01748,560,582 - 48,566,936 (+)NCBI
RefSeq Acc Id: XM_038691625   ⟹   XP_038547553
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01749,476,595 - 49,483,042 (+)NCBI
RefSeq Acc Id: XM_038691626   ⟹   XP_038547554
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01749,476,688 - 49,483,042 (+)NCBI
RefSeq Acc Id: XM_038691627   ⟹   XP_038547555
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01749,476,642 - 49,483,042 (+)NCBI
RefSeq Acc Id: XM_038691629   ⟹   XP_038547557
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01749,476,688 - 49,483,042 (+)NCBI
RefSeq Acc Id: ENSCAFP00000012395   ⟸   ENSCAFT00000013395
RefSeq Acc Id: XP_038354997   ⟸   XM_038499069
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038354999   ⟸   XM_038499071
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038355000   ⟸   XM_038499072
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038354998   ⟸   XM_038499070
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038481626   ⟸   XM_038625698
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038481628   ⟸   XM_038625700
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038481629   ⟸   XM_038625701
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038481627   ⟸   XM_038625699
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038547553   ⟸   XM_038691625
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PEN7 (UniProtKB/TrEMBL),   A0A8P0SDJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038547555   ⟸   XM_038691627
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PEN7 (UniProtKB/TrEMBL),   A0A8P0SDJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038547557   ⟸   XM_038691629
- Peptide Label: isoform X2
- UniProtKB: A0A8P0SDJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038547554   ⟸   XM_038691626
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PEN7 (UniProtKB/TrEMBL),   A0A8P0SDJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038309035   ⟸   XM_038453107
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SDJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038417585   ⟸   XM_038561657
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PEN7 (UniProtKB/TrEMBL),   A0A8P0SDJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038417587   ⟸   XM_038561659
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PEN7 (UniProtKB/TrEMBL),   A0A8P0SDJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038417588   ⟸   XM_038561660
- Peptide Label: isoform X2
- UniProtKB: A0A8P0SDJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038417586   ⟸   XM_038561658
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PEN7 (UniProtKB/TrEMBL),   A0A8P0SDJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845025860   ⟸   ENSCAFT00845033040

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008425 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030019196 UniProtKB/TrEMBL
  ENSCAFG00040007830 UniProtKB/TrEMBL
  ENSCAFG00845018690 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000013395.5 UniProtKB/TrEMBL
  ENSCAFT00030035297.1 UniProtKB/TrEMBL
  ENSCAFT00040014567.1 UniProtKB/TrEMBL
  ENSCAFT00845033040 ENTREZGENE
  ENSCAFT00845033040.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1080 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro DUF1605 UniProtKB/TrEMBL
  HA2_WH UniProtKB/TrEMBL
  Helicase-assoc_dom UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene DQX1 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE UniProtKB/TrEMBL
  ATP-DEPENDENT RNA HELICASE DQX1 UniProtKB/TrEMBL
Pfam HA2 UniProtKB/TrEMBL
  HA2_C UniProtKB/TrEMBL
  OB_NTP_bind UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HA2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0P2T6_CANLF UniProtKB/TrEMBL
  A0A8I3PEN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SDJ8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:40086 ENTREZGENE