Ckap4 (cytoskeleton associated protein 4) - Rat Genome Database

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Gene: Ckap4 (cytoskeleton associated protein 4) Heterocephalus glaber
Analyze
Symbol: Ckap4
Name: cytoskeleton associated protein 4
RGD ID: 18929558
Description: ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); lipid droplet (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytoskeleton-associated protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247503,067,167 - 3,079,095 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Ckap4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247503,067,167 - 3,079,095 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CKAP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812106,237,881 - 106,248,020 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12106,237,881 - 106,304,279 (-)EnsemblGRCh38hg38GRCh38
GRCh3712106,631,659 - 106,641,798 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612105,155,910 - 105,165,843 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412105,134,258 - 105,144,180NCBI
Celera12106,297,004 - 106,307,057 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12103,692,427 - 103,702,094 (-)NCBIHuRef
CHM1_112106,597,488 - 106,607,544 (-)NCBICHM1_1
T2T-CHM13v2.012106,200,876 - 106,211,009 (-)NCBIT2T-CHM13v2.0
Ckap4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391084,362,169 - 84,369,752 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1084,362,169 - 84,369,926 (-)EnsemblGRCm39 Ensembl
GRCm381084,526,305 - 84,533,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1084,526,305 - 84,534,062 (-)EnsemblGRCm38mm10GRCm38
MGSCv371083,989,050 - 83,996,633 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361083,956,104 - 83,963,687 (-)NCBIMGSCv36mm8
Celera1086,505,218 - 86,512,538 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.52NCBI
Ckap4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8721,118,527 - 21,126,624 (+)NCBIGRCr8
mRatBN7.2719,230,814 - 19,238,914 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl719,230,203 - 19,238,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx721,191,759 - 21,199,836 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0723,354,431 - 23,362,511 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0723,131,395 - 23,139,469 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0724,935,243 - 24,947,595 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl724,939,498 - 24,947,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0725,080,829 - 25,093,002 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4721,360,351 - 21,368,448 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1721,380,378 - 21,388,718 (+)NCBI
Celera716,439,983 - 16,448,066 (+)NCBICelera
Cytogenetic Map7q13NCBI
Ckap4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540540,277,082 - 40,279,486 (-)NCBIChiLan1.0ChiLan1.0
CKAP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210114,305,691 - 114,316,052 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112114,302,088 - 114,312,039 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012103,817,736 - 103,827,575 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112107,212,467 - 107,221,835 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12107,212,467 - 107,221,842 (-)Ensemblpanpan1.1panPan2
CKAP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11032,389,226 - 32,398,464 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1032,389,086 - 32,398,475 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1032,309,072 - 32,318,318 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01033,230,145 - 33,239,393 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1033,229,742 - 33,239,291 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11032,966,175 - 32,975,415 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01033,254,845 - 33,264,099 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01033,442,555 - 33,451,808 (+)NCBIUU_Cfam_GSD_1.0
Ckap4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494515,625,519 - 15,628,150 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364928,635,275 - 8,638,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CKAP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl514,021,131 - 14,030,039 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1514,021,131 - 14,031,196 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2514,098,558 - 14,107,444 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CKAP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111101,460,989 - 101,471,104 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11101,460,759 - 101,471,474 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037143,565,403 - 143,575,609 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004845067   ⟹   XP_004845124
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247503,067,167 - 3,079,095 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004845124 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16321 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013400
RefSeq Acc Id: XP_004845124   ⟸   XM_004845067
- UniProtKB: A0AAX6P792 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009580 ENTREZGENE
Ensembl Transcript ENSHGLT00000013540 ENTREZGENE
NCBI Gene Ckap4 ENTREZGENE
UniProt A0AAX6P792 ENTREZGENE, UniProtKB/TrEMBL