Arrdc5 (arrestin domain containing 5) - Rat Genome Database

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Gene: Arrdc5 (arrestin domain containing 5) Heterocephalus glaber
Analyze
Symbol: Arrdc5
Name: arrestin domain containing 5
RGD ID: 18929023
Description: INVOLVED IN spermatogenesis (ortholog); FOUND IN membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Arrestin domain-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,934,137 - 4,939,114 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,934,096 - 4,939,147 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
endosome  (IEA)
membrane  (ISO)
plasma membrane  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Arrdc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,934,137 - 4,939,114 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,934,096 - 4,939,147 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ARRDC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,890,437 - 4,916,820 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,890,437 - 4,902,948 (-)EnsemblGRCh38hg38GRCh38
GRCh37194,890,449 - 4,902,908 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,841,449 - 4,853,879 (-)NCBINCBI36Build 36hg18NCBI36
Celera194,827,460 - 4,839,887 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef194,652,373 - 4,664,861 (-)NCBIHuRef
CHM1_1194,890,053 - 4,902,743 (-)NCBICHM1_1
T2T-CHM13v2.0194,875,655 - 4,902,266 (-)NCBIT2T-CHM13v2.0
Arrdc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,601,111 - 56,607,262 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,601,111 - 56,607,286 (-)EnsemblGRCm39 Ensembl
GRCm381756,294,111 - 56,300,286 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,294,111 - 56,300,286 (-)EnsemblGRCm38mm10GRCm38
MGSCv371756,433,534 - 56,439,709 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361755,927,820 - 55,933,995 (-)NCBIMGSCv36mm8
Celera1760,647,948 - 60,654,123 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.26NCBI
Arrdc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,213,794 - 1,221,188 (-)NCBIGRCr8
mRatBN7.291,126,644 - 1,132,736 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,126,644 - 1,132,816 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,572,320 - 1,578,413 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.096,920,310 - 6,926,401 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.095,877,364 - 5,883,457 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,760,113 - 10,766,199 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,760,113 - 10,766,199 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,751,885 - 9,757,867 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,377,403 - 7,383,399 (+)NCBICelera
Cytogenetic Map9q11NCBI
Arrdc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554954,161,222 - 4,171,830 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554954,161,144 - 4,166,968 (+)NCBIChiLan1.0ChiLan1.0
ARRDC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2209,279,244 - 9,302,270 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,508,640 - 8,531,582 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0193,908,149 - 3,920,239 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ARRDC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,894,127 - 54,905,935 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,893,935 - 54,905,934 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2054,618,503 - 54,630,313 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02055,548,639 - 55,560,436 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2055,548,441 - 55,560,435 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12054,609,915 - 54,621,718 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,090,635 - 55,102,431 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02055,288,509 - 55,300,323 (+)NCBIUU_Cfam_GSD_1.0
Arrdc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,975,581 - 214,982,249 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,852,574 - 2,859,142 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,851,711 - 2,859,142 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARRDC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,935,721 - 73,950,575 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,935,538 - 73,950,586 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ARRDC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.164,578,953 - 4,584,429 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660813,550,425 - 3,563,766 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000019856   ⟹   ENSHGLP00000019660
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248284,934,137 - 4,939,114 (+)Ensembl
RefSeq Acc Id: XM_004865713   ⟹   XP_004865770
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248284,934,096 - 4,939,147 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004865770 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15124 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019660
RefSeq Acc Id: XP_004865770   ⟸   XM_004865713
- UniProtKB: G5C0R3 (UniProtKB/TrEMBL),   A0AAX6Q524 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000019660   ⟸   ENSHGLT00000019856


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014076 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019856 ENTREZGENE
Gene3D-CATH 2.60.40.640 UniProtKB/TrEMBL
InterPro Arrestin-like_C UniProtKB/TrEMBL
  Arrestin-like_N UniProtKB/TrEMBL
  Arrestin_C-like UniProtKB/TrEMBL
  Arrestin_domain-protein UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
KEGG Report hgl:101720533 UniProtKB/TrEMBL
NCBI Gene Arrdc5 ENTREZGENE
PANTHER ARRESTIN DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  ARRESTIN DOMAIN-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
Pfam Arrestin_C UniProtKB/TrEMBL
  Arrestin_N UniProtKB/TrEMBL
SMART Arrestin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/TrEMBL
UniProt A0AAX6Q524 ENTREZGENE, UniProtKB/TrEMBL
  G5C0R3 ENTREZGENE, UniProtKB/TrEMBL