Mageb17 (MAGE family member B17) - Rat Genome Database

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Gene: Mageb17 (MAGE family member B17) Heterocephalus glaber
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Symbol: Mageb17
Name: MAGE family member B17
RGD ID: 18928019
Description: INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: melanoma-associated antigen B17
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624829952,873 - 956,808 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mageb17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624829952,873 - 956,808 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MAGEB17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X16,167,481 - 16,171,464 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX16,167,481 - 16,171,464 (+)EnsemblGRCh38hg38GRCh38
GRCh37X16,185,604 - 16,189,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X16,093,700 - 16,100,589 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX20,302,062 - 20,307,798 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX13,941,431 - 13,945,420 (+)NCBIHuRef
CHM1_1X16,216,543 - 16,220,455 (+)NCBICHM1_1
T2T-CHM13v2.0X15,750,384 - 15,754,369 (+)NCBIT2T-CHM13v2.0
Mageb17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555192,014,946 - 2,018,784 (-)NCBIChiLan1.0ChiLan1.0
MAGEB17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X17,960,802 - 17,969,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X17,963,860 - 17,972,566 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X8,787,805 - 8,793,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X16,143,813 - 16,149,823 (+)NCBIpanpan1.1PanPan1.1panPan2
LOC100682826
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X110,687,192 - 110,694,493 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX96,509,858 - 96,517,811 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X112,678,538 - 112,686,486 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X109,805,253 - 109,813,216 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X111,995,481 - 112,003,428 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X111,669,944 - 111,677,894 (+)NCBIUU_Cfam_GSD_1.0
Mageb17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X5,580,765 - 5,584,522 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364705,582,981 - 5,584,009 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAGEB17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X14,618,405 - 14,622,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX14,620,478 - 14,621,485 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605616,472,472 - 16,476,539 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021245360   ⟹   XP_021101019
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624829954,745 - 956,808 (+)NCBI
RefSeq Acc Id: XM_021245361   ⟹   XP_021101020
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624829952,873 - 956,808 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021101019 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101020 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021101020   ⟸   XM_021245361
- Peptide Label: isoform X2
- UniProtKB: A0AAX6S069 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101019   ⟸   XM_021245360
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RX29 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
NCBI Gene Mageb17 ENTREZGENE
UniProt A0AAX6RX29 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S069 ENTREZGENE, UniProtKB/TrEMBL