MAGEB17 (MAGE family member B17) - Rat Genome Database

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Gene: MAGEB17 (MAGE family member B17) Chlorocebus sabaeus
Analyze
Symbol: MAGEB17
Name: MAGE family member B17
RGD ID: 18775839
Description: INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: melanoma-associated antigen B17
RGD Orthologs
Human
Chinchilla
Bonobo
Squirrel
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X14,618,405 - 14,622,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX14,620,478 - 14,621,485 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605616,472,472 - 16,476,539 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MAGEB17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X14,618,405 - 14,622,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX14,620,478 - 14,621,485 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605616,472,472 - 16,476,539 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MAGEB17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X16,167,481 - 16,171,464 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX16,167,481 - 16,171,464 (+)EnsemblGRCh38hg38GRCh38
GRCh37X16,185,604 - 16,189,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X16,093,700 - 16,100,589 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX20,302,062 - 20,307,798 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX13,941,431 - 13,945,420 (+)NCBIHuRef
CHM1_1X16,216,543 - 16,220,455 (+)NCBICHM1_1
T2T-CHM13v2.0X15,750,384 - 15,754,369 (+)NCBIT2T-CHM13v2.0
Mageb17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555192,014,946 - 2,018,784 (-)NCBIChiLan1.0ChiLan1.0
MAGEB17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X17,960,802 - 17,969,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X17,963,860 - 17,972,566 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X8,787,805 - 8,793,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X16,143,813 - 16,149,823 (+)NCBIpanpan1.1PanPan1.1panPan2
Mageb17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X5,580,765 - 5,584,522 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364705,582,981 - 5,584,009 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Mageb17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624829952,873 - 956,808 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system nervous system
High
Medium
Low 10
Below cutoff 7 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000019624   ⟹   ENSCSAP00000019033
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX14,620,478 - 14,621,485 (+)Ensembl
RefSeq Acc Id: XM_037986610   ⟹   XP_037842538
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605616,472,472 - 16,476,539 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037842538 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000019033.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000019033   ⟸   ENSCSAT00000019624
RefSeq Acc Id: XP_037842538   ⟸   XM_037986610


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019534 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019624.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1200 UniProtKB/TrEMBL
  1.10.10.1210 UniProtKB/TrEMBL
InterPro MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/TrEMBL
  MHD_dom UniProtKB/TrEMBL
KEGG Report csab:103231650 UniProtKB/TrEMBL
NCBI Gene MAGEB17 ENTREZGENE
PANTHER MELANOMA-ASSOCIATED ANTIGEN B17 UniProtKB/TrEMBL
  PTHR11736 UniProtKB/TrEMBL
Pfam MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
PROSITE MAGE UniProtKB/TrEMBL
SMART MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
UniProt A0A0D9SDU4_CHLSB UniProtKB/TrEMBL