Ier5l (immediate early response 5 like) - Rat Genome Database

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Gene: Ier5l (immediate early response 5 like) Heterocephalus glaber
Analyze
Symbol: Ier5l
Name: immediate early response 5 like
RGD ID: 18927730
Description: ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: immediate early response gene 5-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247605,953,868 - 5,955,073 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247605,953,687 - 5,956,362 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Ier5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247605,953,868 - 5,955,073 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247605,953,687 - 5,956,362 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IER5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389129,175,552 - 129,178,261 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9129,175,552 - 129,178,261 (-)EnsemblGRCh38hg38GRCh38
GRCh379131,937,831 - 131,940,540 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,977,652 - 130,980,361 (-)NCBINCBI36Build 36hg18NCBI36
Build 349129,018,511 - 129,020,080NCBI
Celera9102,590,120 - 102,592,833 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9101,545,290 - 101,547,633 (-)NCBIHuRef
CHM1_19132,088,662 - 132,091,375 (-)NCBICHM1_1
T2T-CHM13v2.09141,379,030 - 141,381,743 (-)NCBIT2T-CHM13v2.0
Ier5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,362,643 - 30,364,211 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl230,361,549 - 30,364,231 (-)EnsemblGRCm39 Ensembl
GRCm38230,472,631 - 30,474,199 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,471,537 - 30,474,219 (-)EnsemblGRCm38mm10GRCm38
MGSCv37230,328,151 - 30,329,719 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36230,293,547 - 30,296,228 (-)NCBIMGSCv36mm8
Celera230,177,428 - 30,179,159 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.71NCBI
Ier5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8334,141,866 - 34,143,457 (-)NCBIGRCr8
mRatBN7.2313,744,056 - 13,745,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,744,078 - 13,745,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,815,581 - 16,817,172 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0325,400,543 - 25,402,134 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,646,713 - 23,648,296 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.039,036,351 - 9,037,942 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,036,373 - 9,037,942 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,389,470 - 14,391,061 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,515,947 - 9,517,538 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera38,510,665 - 8,512,260 (-)NCBICelera
Cytogenetic Map3p12NCBI
Ier5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,480,851 - 1,482,098 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555701,479,582 - 1,482,281 (-)NCBIChiLan1.0ChiLan1.0
IER5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21110,170,905 - 10,175,897 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1910,175,514 - 10,177,132 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09100,300,931 - 100,303,651 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
IER5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,509,842 - 54,512,554 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,510,047 - 54,511,276 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,705,489 - 53,708,162 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0955,405,734 - 55,408,446 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl955,405,943 - 55,407,169 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,192,384 - 54,195,091 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0954,504,499 - 54,507,213 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0954,597,894 - 54,600,607 (+)NCBIUU_Cfam_GSD_1.0
Ier5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,814,556 - 196,817,331 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648716,584,381 - 16,585,639 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648716,584,203 - 16,585,824 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IER5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,454,099 - 269,455,310 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,453,920 - 269,455,524 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,469,008 - 303,471,644 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IER5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1128,988,180 - 8,990,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl128,988,433 - 8,989,650 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666096576,232 - 578,931 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004849139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01040461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000029088   ⟹   ENSHGLP00000028569
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247605,953,868 - 5,955,073 (+)Ensembl
RefSeq Acc Id: XM_004849139   ⟹   XP_004849196
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247605,953,687 - 5,956,362 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004849196 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028569
RefSeq Acc Id: XP_004849196   ⟸   XM_004849139
Ensembl Acc Id: ENSHGLP00000028569   ⟸   ENSHGLT00000029088


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020878 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000029088 ENTREZGENE
NCBI Gene Ier5l ENTREZGENE