| Gene: Ier5l (immediate early response 5 like) Chinchilla lanigera |
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Analyze |
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| Symbol: |
Ier5l |
| Name: |
immediate early response 5 like |
| RGD ID: |
8750033 |
| Description: |
ASSOCIATED WITH genetic disease (ortholog); primary coenzyme Q10 deficiency 7 (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
immediate early response 5-like |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| NCBI Annotation Information: |
Annotation category: partial on reference assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955570 | 1,480,851 - 1,482,098 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955570 | 1,479,582 - 1,482,281 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
Ier5l
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955570 | 1,480,851 - 1,482,098 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955570 | 1,479,582 - 1,482,281 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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IER5L
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 9 | 129,175,552 - 129,178,261 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 9 | 129,175,552 - 129,178,261 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 9 | 131,937,831 - 131,940,540 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 9 | 130,977,652 - 130,980,361 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 9 | 129,018,511 - 129,020,080 | NCBI | | | | | Celera | 9 | 102,590,120 - 102,592,833 (-) | NCBI | | Celera | | | Cytogenetic Map | 9 | q34.11 | NCBI | | | | | HuRef | 9 | 101,545,290 - 101,547,633 (-) | NCBI | | HuRef | | | CHM1_1 | 9 | 132,088,662 - 132,091,375 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 9 | 141,379,030 - 141,381,743 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Ier5l
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 2 | 30,362,643 - 30,364,211 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 30,361,549 - 30,364,231 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 2 | 30,472,631 - 30,474,199 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 30,471,537 - 30,474,219 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 2 | 30,328,151 - 30,329,719 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 2 | 30,293,547 - 30,296,228 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 2 | 30,177,428 - 30,179,159 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | B | NCBI | | | | | cM Map | 2 | 21.71 | NCBI | | | | |
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Ier5l
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 3 | 34,141,866 - 34,143,457 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 3 | 13,744,056 - 13,745,647 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 13,744,078 - 13,745,647 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 3 | 16,815,581 - 16,817,172 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 3 | 25,400,543 - 25,402,134 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 3 | 23,646,713 - 23,648,296 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 3 | 9,036,351 - 9,037,942 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 3 | 9,036,373 - 9,037,942 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 3 | 14,389,470 - 14,391,061 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 3 | 9,515,947 - 9,517,538 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 3 | 8,510,665 - 8,512,260 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | p12 | NCBI | | | | |
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IER5L
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 11 | 10,170,905 - 10,175,897 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 9 | 10,175,514 - 10,177,132 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 9 | 100,300,931 - 100,303,651 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | |
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IER5L
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 9 | 54,509,842 - 54,512,554 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 9 | 54,510,047 - 54,511,276 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 9 | 53,705,489 - 53,708,162 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 9 | 55,405,734 - 55,408,446 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 9 | 55,405,943 - 55,407,169 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 9 | 54,192,384 - 54,195,091 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 9 | 54,504,499 - 54,507,213 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 9 | 54,597,894 - 54,600,607 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Ier5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404947 | 196,814,556 - 196,817,331 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936487 | 16,584,381 - 16,585,639 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936487 | 16,584,203 - 16,585,824 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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IER5L
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 1 | 269,454,099 - 269,455,310 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 269,453,920 - 269,455,524 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 303,469,008 - 303,471,644 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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IER5L
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 12 | 8,988,180 - 8,990,935 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 12 | 8,988,433 - 8,989,650 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666096 | 576,232 - 578,931 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Ier5l
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
ENSCLAT00000002285 ⟹ ENSCLAP00000002239 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 Ensembl | NW_004955570 | 1,480,851 - 1,482,098 (-) | Ensembl |
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| RefSeq Acc Id: |
XM_013509437 ⟹ XP_013364891 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 | NW_004955570 | 1,479,582 - 1,482,281 (-) | NCBI |
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| Sequence: |
GCCGTCTGGGGAGCGTGAGCCAGCGGGTGGCGCACGGCGCATGGTGGCGGCTCCTCTCGGAGCG
CAGCCGACCCGCTGACCCGGGCTCCGTTCCCCCTTACCCGGCGCGCCCCAGCAGCCGGCTAGAG
GCAGAAACAGCAGCAGTACTAACAGGAGCAGCGGCGGCTGCTTCGCCGCGGGAGCATGGAGTGC
GCCCTGGACGCCCAGAGCCTGATCAGCATCTCCCTGCGCAAGATCCACAGCTCCCGGACCCAGC
GCGGCGGCATCAAGCTGCACAAGAACCTCCTGGTGTCCTACGTGCTCCGCAACGCGCGCCAGCT
CTACCTGAGCGAGCGCTACGCCGAGCTCTACCGGCGCCAGCAGCCTCCGCTGCAGCCGCAGCCG
CCCCTCCACCAGCACCAGCCCCTCGGTTACGCGGCGGCGGCGCCCGGCATGCCGGCCAGCGCGG
CCGACTTCGGCCCACTCCAACTTGGCGGCGGCGGCGGCGGGGACGCGGAGGCGCGCGAGCCGGC
CGCCCGGCACCAGCTGCACCCGCTTCACCAGCTCCACCAGCTGCACCTCCAGCAGCAGCTGCAC
CAGCCCCAGCAGCACCCGGCGCCCAGGGGCTGCGCGGCGGCGGCGGCCGGGGCGCTCGCGGAGC
TGCCCGGGTGCGCCGCGCTCCAGCCGCCGCACGGCGCGCCCCACCGCGGACAGCCCCTGGAGCC
GCTGCAGCCGGGTCCACCGCCGCCCGCGCCCGCCGCGCTCTGCCCGCGGGACCCTCGCGCCTCC
GCCGCCTGCTCCGCGCCCTCCGCGCCCTCCGCGCCCCCAGGGGCCGCCCCTCCGGCCGCCGCCT
CCCCGCCCATCTCCCCGGCCCCCGCCTCCTCCTCGGGCTTCTACCGGGGCGCGTACCCGGCCCC
CTCGGACTTCGGCGTGCACTGCAGCAGCCAGACCACCGTGCTGGACCTGGACACACACGTGGTG
ACCACGGTGGAAAACGGCTACTTGCACCAGGACTGCTGCGCCTCCGCCCACTGCCCCTGCTGTG
GCCAGGGCGCTCCGGGACCGGGCCTGGCGTCCGCCGCCGCCGGGTGCAAGCGCAAGTATTACCC
TGGCCAGGAGGAGGAGGACGACGAGGAGGAGGACGCGGGCGACTTGGGGGCCGAACCCCCCGGG
GGCGCCCTGTTCGCCCCCTGCAAGCGCGCCCGCTTCGAGGACTTCTGCCCGGACTCGTCCCCGG
ACGCGTCTAACATCTCAAACTTGATCTCCATCTTTGGCTCGGGCTTCTCGGGGCTGGTGAGCCG
ACAGCCGGACTCGGAGCAGGCGCCGCCGCTCAACGGGCAGCTGTGCGCCAAGCAGGCGCTCGCC
AGCCTCGGCGCCTGGACTCGAGCCATTGTCGCCTTCTAGGGACCCCCGAGGGCACGGGGCCCCG
GGGCCCCGCGGGGCTAGGGCCAGACAAAGACTCGACCAAGGGGCGAGAAGAGGGAGCGAGCGGG
CGCCCAGCCACTCGGACCTGAGCTGGGGGCGAGCAGGGGGAGGCGGGTGATGTTTTATAATTGT
AAAATAAAGAAAAAGAAATATAAAATCTTGGACTTTATTTTTGCAGAGAGAAAAAGCGCCTATT
TAAGTATGCTTTGTGTTTCTCCTACTCTTTTTTTTCCCCTCTTTTTATTGTAGTGATTGCAGTG
GTGTTTAGCGAGGAGCCTGCCACGTGAGGGAGGGCTGCGGCCCGCAGGAGCTGCCGGGCGGCCG
AGGGCGAGGCAGGGCGCGCGGGCCACCGGGGCGCAACGCAGGAGGGCGCGGAGCTGGGGACGCA
GATTCCAATCAGTTGTCAGACGCGGGAAGCCCGACGTTCCGCTCTCCTGAGTCCCTCTGTGGGG
TGAGGAATGAGTCTTGTGAAATCCTCAGCAAAAAACAAAGGCAAACTCTATCTCCAAAAGGGAC
GTTTGGGTCACATTTCCTCTCTGGGGGCGGCCTCCAAAGTTCTCCAAATGAGAAGGCAGAAATG
AAAACACTTCAACTTTTTTTTTTCTTTTCTTCCCGGGGCGGGTGTTTTGAACCCCTTCTCTCCC
CGCCCCTCTGGCTCCGCTCTCCTCCCATCCTCCACCAGTCTCCCGGATTCCGGGGTGGCGCCCG
ACACCCCGACACTCTGGACACTGTTTGGGGAAAGGGTGGGGGGCGAGCACAGAGGACTACATTT
CCCATCATGCCCAGCACTGCGGTCCTCACTAAACAAAAAAGGAAGTCGATTCCTTCACCTGGAT
CCCCGGCGGCCCCGGGGGAGGGAGGGGCCGGGCCCGCCGACTGCGTCGGAGACTTCTCACTAAG
TTCCTGGTCAGCTGTGATGTTTGTGTGTGTTTCTGAGTTGCACGGTCTCTGCTCAGCCTTCGGT
TGCATTTCATGAAACCAGCATTGTTCGAGTCTGTGAGAACCCTGTCCTGTGATCTTCAGCTCCA
TAGATTTTAATTTAAAAGCCTTTTGTTGTAAAAAGCTGGGGGTTCATCTGCAGCCCCTCTCGCA
CCATGCGGACTCCAAGACAGGTTGCCAGTTACCTTCCTCTGCCCTTCTCCCCCGTTCTCCTGTA
TTTTGTGCATACTGGATTGTGTATCACCGGATAAAACTGTTCAGATGATTTGTTTAAATTTATA
ATCTTAATAAAAAGTCGATTGTAGAGTA
hide sequence
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| RefSeq Acc Id: |
XP_013364891 ⟸ XM_013509437 |
| - Sequence: |
MECALDAQSLISISLRKIHSSRTQRGGIKLHKNLLVSYVLRNARQLYLSERYAELYRRQQPPLQ
PQPPLHQHQPLGYAAAAPGMPASAADFGPLQLGGGGGGDAEAREPAARHQLHPLHQLHQLHLQQ
QLHQPQQHPAPRGCAAAAAGALAELPGCAALQPPHGAPHRGQPLEPLQPGPPPPAPAALCPRDP
RASAACSAPSAPSAPPGAAPPAAASPPISPAPASSSGFYRGAYPAPSDFGVHCSSQTTVLDLDT
HVVTTVENGYLHQDCCASAHCPCCGQGAPGPGLASAAAGCKRKYYPGQEEEDDEEEDAGDLGAE
PPGGALFAPCKRARFEDFCPDSSPDASNISNLISIFGSGFSGLVSRQPDSEQAPPLNGQLCAKQ
ALASLGAWTRAIVAF
hide sequence
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| RefSeq Acc Id: |
ENSCLAP00000002239 ⟸ ENSCLAT00000002285 |
Additional Information
Nomenclature History
| Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
| 2016-08-03 |
Ier5l |
immediate early response 5 like |
|
immediate early response 5-like |
Symbol and/or name change |
5135510 |
APPROVED |
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