LOC101706975 (cytochrome c oxidase subunit 6B2) - Rat Genome Database

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Gene: LOC101706975 (cytochrome c oxidase subunit 6B2) Heterocephalus glaber
Analyze
Symbol: LOC101706975 (Ensembl: COX6B2)
Name: cytochrome c oxidase subunit 6B2
RGD ID: 18926263
Description: FOUND IN mitochondrial crista (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: COX6B2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248321,943,057 - 1,944,078 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248321,943,006 - 1,944,060 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101706975
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248321,943,057 - 1,944,078 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248321,943,006 - 1,944,060 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COX6B2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,349,704 - 55,354,719 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,349,306 - 55,354,719 (-)EnsemblGRCh38hg38GRCh38
GRCh371955,861,072 - 55,866,087 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,552,882 - 60,557,994 (-)NCBINCBI36Build 36hg18NCBI36
Build 341960,552,485 - 60,557,876NCBI
Celera1952,902,036 - 52,907,148 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1952,183,370 - 52,188,482 (-)NCBIHuRef
CHM1_11955,854,890 - 55,860,002 (-)NCBICHM1_1
T2T-CHM13v2.01958,445,210 - 58,450,225 (-)NCBIT2T-CHM13v2.0
Cox6b2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,754,791 - 4,756,093 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,754,791 - 4,756,093 (-)EnsemblGRCm39 Ensembl
GRCm3874,751,792 - 4,753,094 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,751,792 - 4,753,094 (-)EnsemblGRCm38mm10GRCm38
MGSCv3774,703,396 - 4,704,696 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3674,354,881 - 4,356,181 (-)NCBIMGSCv36mm8
Celera74,481,918 - 4,483,218 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.75NCBI
Cox6b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,122,871 - 78,124,096 (+)NCBIGRCr8
mRatBN7.2169,094,009 - 69,095,312 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx174,439,122 - 74,440,347 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0183,003,425 - 83,004,650 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,152,185 - 76,153,410 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,661,099 - 72,662,436 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,661,211 - 72,662,434 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0175,873,172 - 75,874,397 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,810,527 - 67,811,752 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera168,029,202 - 68,030,427 (-)NCBICelera
Cytogenetic Map1q12NCBI
LOC102023082
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955567890,846 - 891,675 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955567890,281 - 891,675 (+)NCBIChiLan1.0ChiLan1.0
LOC100983343
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22061,487,169 - 61,492,439 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11963,216,253 - 63,221,529 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01952,392,907 - 52,397,198 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11961,081,662 - 61,086,080 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1961,083,744 - 61,086,080 (-)Ensemblpanpan1.1panPan2
LOC119870901
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1102,384,470 - 102,385,941 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01102,980,956 - 102,982,434 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1102,980,651 - 102,983,647 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,618,227 - 102,619,704 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,330,552 - 102,331,728 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,093,516 - 103,094,984 (+)NCBIUU_Cfam_GSD_1.0
COX6B2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,530,354 - 59,531,814 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1659,530,419 - 59,531,770 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103235309
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,955,935 - 47,957,558 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045590,420 - 595,193 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016158   ⟹   ENSHGLP00000015990
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248321,943,057 - 1,944,078 (+)Ensembl
RefSeq Acc Id: XM_004866656   ⟹   XP_004866713
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248321,943,020 - 1,944,060 (+)NCBI
RefSeq Acc Id: XM_004866657   ⟹   XP_004866714
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248321,943,006 - 1,944,060 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004866713 (Get FASTA)   NCBI Sequence Viewer  
  XP_004866714 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13457 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015990
GenBank Protein JAN97188 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004866714   ⟸   XM_004866657
- UniProtKB: G5BVZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004866713   ⟸   XM_004866656
- UniProtKB: G5BVZ6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015990   ⟸   ENSHGLT00000016158


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011433 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016158 ENTREZGENE
Gene3D-CATH 1.10.10.140 UniProtKB/TrEMBL
InterPro COX6B-like UniProtKB/TrEMBL
  Cyt_c_oxidase_su6B UniProtKB/TrEMBL
  Cyt_c_oxidase_su6B_sf UniProtKB/TrEMBL
KEGG Report hgl:101706975 UniProtKB/TrEMBL
NCBI Gene LOC101706975 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE SUBUNIT 6B2 UniProtKB/TrEMBL
  PTHR11387 UniProtKB/TrEMBL
Pfam COX6B UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
Superfamily-SCOP SSF47694 UniProtKB/TrEMBL
UniProt G5BVZ6 ENTREZGENE, UniProtKB/TrEMBL