Commd3 (COMM domain containing 3) - Rat Genome Database

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Gene: Commd3 (COMM domain containing 3) Heterocephalus glaber
Analyze
Symbol: Commd3
Name: COMM domain containing 3
RGD ID: 18919623
Description: INVOLVED IN sodium ion transport (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: COMM domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247966,287,849 - 6,291,671 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247966,288,057 - 6,291,618 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Commd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247966,287,849 - 6,291,671 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247966,288,057 - 6,291,618 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COMMD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381022,316,388 - 22,320,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1022,316,386 - 22,320,306 (+)EnsemblGRCh38hg38GRCh38
GRCh371022,605,317 - 22,609,235 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361022,645,305 - 22,649,243 (+)NCBINCBI36Build 36hg18NCBI36
Build 341022,645,304 - 22,649,243NCBI
Celera1022,293,008 - 22,296,946 (+)NCBICelera
Cytogenetic Map10p12.2NCBI
HuRef1022,266,781 - 22,270,715 (+)NCBIHuRef
CHM1_11022,606,039 - 22,609,973 (+)NCBICHM1_1
T2T-CHM13v2.01022,335,422 - 22,339,340 (+)NCBIT2T-CHM13v2.0
Commd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39218,677,246 - 18,681,042 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl218,677,234 - 18,681,042 (+)EnsemblGRCm39 Ensembl
GRCm38218,672,435 - 18,676,231 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl218,672,384 - 18,676,231 (+)EnsemblGRCm38mm10GRCm38
MGSCv37218,594,089 - 18,597,843 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36218,590,216 - 18,593,970 (+)NCBIMGSCv36mm8
Celera218,564,347 - 18,568,097 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map212.9NCBI
Commd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81786,235,863 - 86,239,610 (+)NCBIGRCr8
mRatBN7.21781,327,444 - 81,331,191 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1781,327,405 - 81,331,177 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1784,800,687 - 84,804,431 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01788,636,087 - 88,639,831 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01782,652,829 - 82,656,573 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01785,356,042 - 85,359,835 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1785,356,042 - 85,359,833 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01787,079,392 - 87,083,185 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41792,775,474 - 92,779,187 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11792,786,306 - 92,790,020 (+)NCBI
Celera1780,609,621 - 80,611,929 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Commd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554296,559,719 - 6,564,414 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554296,559,824 - 6,563,701 (-)NCBIChiLan1.0ChiLan1.0
COMMD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2834,996,486 - 35,000,478 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11035,001,811 - 35,005,803 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01022,473,001 - 22,476,953 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11022,848,417 - 22,852,396 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1022,848,417 - 22,852,396 (+)Ensemblpanpan1.1panPan2
COMMD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1210,829,693 - 10,833,643 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl210,818,232 - 10,833,613 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha29,523,153 - 9,527,025 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.029,029,718 - 9,033,594 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl29,018,100 - 9,033,607 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.128,393,400 - 8,397,270 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.028,477,575 - 8,481,443 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.028,645,450 - 8,649,327 (-)NCBIUU_Cfam_GSD_1.0
Commd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934422,237,251 - 22,241,696 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365205,718,150 - 5,723,257 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365205,718,776 - 5,722,644 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COMMD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1052,597,587 - 52,601,733 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11052,597,391 - 52,601,376 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21058,251,896 - 58,255,880 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COMMD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1922,090,426 - 22,094,386 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605127,833,050 - 27,837,814 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000005996   ⟹   ENSHGLP00000005922
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247966,287,849 - 6,291,671 (-)Ensembl
RefSeq Acc Id: XM_004859927   ⟹   XP_004859984
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247966,288,057 - 6,291,618 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004859984 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005922
GenBank Protein JAO00818 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004859984   ⟸   XM_004859927
- UniProtKB: A0A0P6JAS9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000005922   ⟸   ENSHGLT00000005996


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004324 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005996 ENTREZGENE
InterPro COMM UniProtKB/TrEMBL
  COMMD3 UniProtKB/TrEMBL
KEGG Report hgl:106007576 UniProtKB/TrEMBL
NCBI Gene Commd3 ENTREZGENE
PANTHER COMM DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  PTHR31159 UniProtKB/TrEMBL
Pfam COMM_domain UniProtKB/TrEMBL
  COMM_HN UniProtKB/TrEMBL
PROSITE COMM UniProtKB/TrEMBL
UniProt A0A0P6JAS9 ENTREZGENE, UniProtKB/TrEMBL