Hexim1 (HEXIM P-TEFb complex subunit 1) - Rat Genome Database

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Gene: Hexim1 (HEXIM P-TEFb complex subunit 1) Heterocephalus glaber
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Symbol: Hexim1
Name: HEXIM P-TEFb complex subunit 1
RGD ID: 18919225
Description: ENCODES a protein that exhibits 7SK snRNA binding (ortholog); cyclin-dependent protein serine/threonine kinase inhibitor activity (ortholog); identical protein binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); heart development (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN 7SK snRNP (ortholog); cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hexamethylene bisacetamide inducible 1; protein HEXIM1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624795257,553 - 260,685 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hexim1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624795257,553 - 260,685 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HEXIM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381745,148,475 - 45,152,099 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1745,148,475 - 45,152,099 (+)EnsemblGRCh38hg38GRCh38
GRCh371743,225,842 - 43,229,466 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361740,580,467 - 40,585,251 (+)NCBINCBI36Build 36hg18NCBI36
Celera1739,934,331 - 39,939,117 (+)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1738,987,505 - 38,992,292 (+)NCBIHuRef
CHM1_11743,460,225 - 43,465,014 (+)NCBICHM1_1
T2T-CHM13v2.01746,002,353 - 46,005,981 (+)NCBIT2T-CHM13v2.0
Hexim1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911103,007,151 - 103,010,551 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11103,007,057 - 103,010,551 (+)EnsemblGRCm39 Ensembl
GRCm3811103,116,325 - 103,119,725 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11103,116,231 - 103,119,725 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711102,977,639 - 102,981,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611102,932,415 - 102,935,815 (+)NCBIMGSCv36mm8
Celera11114,825,827 - 114,829,227 (+)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1166.71NCBI
Hexim1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81088,562,889 - 88,565,001 (+)NCBIGRCr8
mRatBN7.21088,062,808 - 88,064,920 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1088,062,803 - 88,066,189 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1093,098,953 - 93,101,065 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01092,565,589 - 92,567,701 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01087,958,941 - 87,961,053 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01091,200,874 - 91,202,986 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1091,200,874 - 91,202,984 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01090,972,403 - 90,974,515 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41092,290,289 - 92,292,401 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1086,764,295 - 86,766,407 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
HEXIM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21919,687,135 - 19,692,645 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11721,654,299 - 21,659,500 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01712,175,544 - 12,180,077 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11712,351,793 - 12,357,120 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1712,353,590 - 12,354,669 (-)Ensemblpanpan1.1panPan2
HEXIM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1918,384,811 - 18,387,981 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha917,769,584 - 17,772,769 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0919,057,848 - 19,061,034 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1917,936,109 - 17,939,293 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0918,114,937 - 18,118,121 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0918,270,918 - 18,274,102 (-)NCBIUU_Cfam_GSD_1.0
Hexim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560217,731,561 - 17,735,493 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365411,459,797 - 1,460,864 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365411,458,474 - 1,463,039 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HEXIM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1218,267,027 - 18,269,165 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11218,267,023 - 18,270,089 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21218,515,737 - 18,518,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HEXIM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11661,258,910 - 61,264,069 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1661,260,769 - 61,261,845 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607732,005,779 - 32,011,150 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004859818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01067263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004859818   ⟹   XP_004859875
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624795257,553 - 260,685 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004859875 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004859875   ⟸   XM_004859818


Additional Information

Database Acc Id Source(s)
NCBI Gene Hexim1 ENTREZGENE