Cercam (cerebral endothelial cell adhesion molecule) - Rat Genome Database

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Gene: Cercam (cerebral endothelial cell adhesion molecule) Heterocephalus glaber
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Symbol: Cercam
Name: cerebral endothelial cell adhesion molecule
RGD ID: 18919029
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cell adhesion (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); dystonia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycosyltransferase 25 family member 3; probable inactive glycosyltransferase 25 family member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,473,249 - 6,483,755 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,472,584 - 6,482,719 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
Cercam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,473,249 - 6,483,755 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,472,584 - 6,482,719 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CERCAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,419,160 - 128,437,351 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,411,751 - 128,437,351 (+)EnsemblGRCh38hg38GRCh38
GRCh379131,181,439 - 131,199,630 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,222,938 - 130,239,447 (+)NCBINCBI36Build 36hg18NCBI36
Build 349128,262,670 - 128,279,177NCBI
Celera9101,833,666 - 101,850,533 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,795,554 - 100,812,508 (+)NCBIHuRef
CHM1_19131,333,812 - 131,350,679 (+)NCBICHM1_1
T2T-CHM13v2.09140,613,098 - 140,644,454 (+)NCBIT2T-CHM13v2.0
Cercam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,735,442 - 29,772,857 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,759,176 - 29,772,852 (+)EnsemblGRCm39 Ensembl
GRCm38229,845,094 - 29,882,840 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl229,869,164 - 29,882,840 (+)EnsemblGRCm38mm10GRCm38
MGSCv37229,725,014 - 29,738,360 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,691,503 - 29,704,849 (+)NCBIMGSCv36mm8
Celera229,576,463 - 29,589,809 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map220.76NCBI
Cercam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,515,513 - 33,553,817 (+)NCBIGRCr8
mRatBN7.2313,118,150 - 13,155,960 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,142,107 - 13,155,956 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,213,951 - 16,230,702 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0324,798,912 - 24,815,667 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,050,064 - 23,066,825 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.038,421,116 - 8,444,743 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,430,829 - 8,444,851 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0313,770,562 - 13,788,193 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.438,854,774 - 8,871,400 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.138,855,073 - 8,871,698 (+)NCBI
Celera37,916,576 - 7,933,368 (+)NCBICelera
Cytogenetic Map3p12NCBI
Cercam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955570915,001 - 928,060 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955570898,157 - 925,581 (+)NCBIChiLan1.0ChiLan1.0
CERCAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21110,914,085 - 10,940,480 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1910,916,431 - 10,942,841 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,541,795 - 99,560,234 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19128,210,576 - 128,227,434 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,210,576 - 128,226,175 (+)Ensemblpanpan1.1panPan2
CERCAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,109,714 - 55,120,015 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,110,523 - 55,121,338 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,304,961 - 54,315,261 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,032,063 - 56,042,374 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,032,077 - 56,042,414 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,791,677 - 54,801,986 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,105,938 - 55,116,230 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,197,840 - 55,208,141 (-)NCBIUU_Cfam_GSD_1.0
Cercam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,165,310 - 196,197,067 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,955,713 - 15,971,536 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,954,510 - 15,965,594 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CERCAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,834,966 - 268,847,223 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,834,967 - 268,847,236 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,890,315 - 302,899,713 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CERCAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,694,476 - 9,719,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,694,426 - 9,713,217 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660796,522,099 - 6,546,285 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000027207   ⟹   ENSHGLP00000026968
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247606,473,249 - 6,483,755 (-)Ensembl
RefSeq Acc Id: XM_013073676   ⟹   XP_012929130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247606,472,584 - 6,482,719 (-)NCBI
RefSeq Acc Id: XM_013073677   ⟹   XP_012929131
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247606,472,584 - 6,482,656 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012929130 (Get FASTA)   NCBI Sequence Viewer  
  XP_012929131 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026968
GenBank Protein JAN98496 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012929130   ⟸   XM_013073676
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JUQ0 (UniProtKB/TrEMBL),   G5ASE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929131   ⟸   XM_013073677
- Peptide Label: isoform X2
- UniProtKB: G5ASE7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026968   ⟸   ENSHGLT00000027207


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019176 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027207 ENTREZGENE
InterPro Collagen_mod_GT25 UniProtKB/TrEMBL
  Glyco_trans_25 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report hgl:101725150 UniProtKB/TrEMBL
NCBI Gene Cercam ENTREZGENE
PANTHER INACTIVE GLYCOSYLTRANSFERASE 25 FAMILY MEMBER 3 UniProtKB/TrEMBL
  PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER UniProtKB/TrEMBL
Pfam Glyco_transf_25 UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A0P6JUQ0 ENTREZGENE, UniProtKB/TrEMBL
  G5ASE7 ENTREZGENE, UniProtKB/TrEMBL