Cideb (cell death inducing DFFA like effector b) - Rat Genome Database

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Gene: Cideb (cell death inducing DFFA like effector b) Heterocephalus glaber
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Symbol: Cideb
Name: cell death inducing DFFA like effector b
RGD ID: 18918565
Description: ENCODES a protein that exhibits identical protein binding (inferred); lipid transfer activity (inferred); molecular adaptor activity (inferred); INVOLVED IN apoptotic process (ortholog); response to nutrient levels (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell death activator CIDE-B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,196,653 - 8,199,367 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,196,608 - 8,199,346 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cideb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,196,653 - 8,199,367 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,196,608 - 8,199,346 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CIDEB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,305,187 - 24,311,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,305,187 - 24,311,430 (-)EnsemblGRCh38hg38GRCh38
GRCh371424,774,393 - 24,780,641 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,844,233 - 23,850,416 (-)NCBINCBI36Build 36hg18NCBI36
Build 341423,844,237 - 23,850,435NCBI
Celera144,639,022 - 4,645,205 (-)NCBICelera
Cytogenetic Map14q12NCBI
HuRef144,889,560 - 4,895,743 (-)NCBIHuRef
CHM1_11424,772,993 - 24,779,176 (-)NCBICHM1_1
T2T-CHM13v2.01418,503,530 - 18,509,778 (-)NCBIT2T-CHM13v2.0
Cideb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,991,509 - 55,995,881 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,991,507 - 55,995,915 (-)EnsemblGRCm39 Ensembl
GRCm381455,754,052 - 55,758,424 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,754,050 - 55,758,458 (-)EnsemblGRCm38mm10GRCm38
MGSCv371456,372,889 - 56,377,261 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,708,119 - 54,717,288 (-)NCBIMGSCv36mm8
Celera1453,559,100 - 53,563,472 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
Cideb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81533,222,135 - 33,226,407 (-)NCBIGRCr8
mRatBN7.21529,252,208 - 29,256,482 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1529,252,213 - 29,256,605 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1531,097,885 - 31,102,157 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01532,245,097 - 32,249,369 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,487,436 - 30,491,708 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,439,844 - 34,444,244 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,439,876 - 34,444,244 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,328,205 - 38,332,605 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,916,472 - 33,920,872 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,932,176 - 33,936,396 (-)NCBI
Celera1528,826,926 - 28,831,327 (-)NCBICelera
Cytogenetic Map15p13NCBI
Cideb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540935,993,853 - 35,996,935 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540935,993,853 - 35,996,935 (+)NCBIChiLan1.0ChiLan1.0
CIDEB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,275,700 - 4,278,612 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha84,197,353 - 4,200,244 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,386,491 - 4,389,382 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,386,937 - 4,389,334 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.184,076,834 - 4,079,730 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.084,138,662 - 4,141,553 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,401,246 - 4,404,137 (-)NCBIUU_Cfam_GSD_1.0
Cideb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864036,138,982 - 36,147,569 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722245,567 - 249,917 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722241,484 - 249,935 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIDEB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl774,982,855 - 74,985,775 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1774,982,941 - 74,985,776 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,253,881 - 80,256,403 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap7q21NCBI
CIDEB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl241,287,932 - 1,291,573 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603612,972,792 - 12,975,751 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000003884   ⟹   ENSHGLP00000003826
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248208,196,653 - 8,199,367 (+)Ensembl
RefSeq Acc Id: XM_004864086   ⟹   XP_004864143
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248208,196,608 - 8,199,346 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004864143 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003826
  ENSHGLP00100008058
GenBank Protein JAN96287 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004864143   ⟸   XM_004864086
- UniProtKB: A0A0P6J250 (UniProtKB/TrEMBL),   G5B277 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000003826   ⟸   ENSHGLT00000003884


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002818 Ensembl, ENTREZGENE
  ENSHGLG00100005994 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003884 ENTREZGENE
  ENSHGLT00100008157 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.10 UniProtKB/TrEMBL
InterPro CIDE-N_dom UniProtKB/TrEMBL
KEGG Report hgl:101721091 UniProtKB/TrEMBL
NCBI Gene Cideb ENTREZGENE
PANTHER CELL DEATH ACTIVATOR CIDE UniProtKB/TrEMBL
  CELL DEATH ACTIVATOR CIDE-B UniProtKB/TrEMBL
Pfam CIDE-N UniProtKB/TrEMBL
PROSITE CIDE_N UniProtKB/TrEMBL
SMART CAD UniProtKB/TrEMBL
Superfamily-SCOP CAD & PB1 domains UniProtKB/TrEMBL
UniProt A0A0P6J250 ENTREZGENE, UniProtKB/TrEMBL
  G5B277 ENTREZGENE, UniProtKB/TrEMBL