Eef1d (eukaryotic translation elongation factor 1 delta) - Rat Genome Database

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Gene: Eef1d (eukaryotic translation elongation factor 1 delta) Heterocephalus glaber
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Symbol: Eef1d
Name: eukaryotic translation elongation factor 1 delta
RGD ID: 18917292
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); heat shock protein binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to heat (ortholog); cellular response to ionizing radiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); chromosome 5q deletion syndrome (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); FOUND IN endoplasmic reticulum (ortholog); fibrillar center (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Elongation factor 1-delta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,154,327 - 13,173,477 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,148,640 - 13,165,259 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Eef1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,154,327 - 13,173,477 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,148,640 - 13,165,259 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
EEF1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,579,728 - 143,597,415 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,579,697 - 143,599,541 (-)EnsemblGRCh38hg38GRCh38
GRCh378144,661,898 - 144,679,585 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368144,733,041 - 144,750,726 (-)NCBINCBI36Build 36hg18NCBI36
Build 348144,733,040 - 144,750,726NCBI
Celera8140,972,129 - 140,990,084 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,913,388 - 139,931,374 (-)NCBIHuRef
CHM1_18144,702,015 - 144,719,993 (-)NCBICHM1_1
T2T-CHM13v2.08144,729,124 - 144,746,827 (-)NCBIT2T-CHM13v2.0
Eef1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,766,643 - 75,781,425 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,766,054 - 75,781,405 (-)EnsemblGRCm39 Ensembl
GRCm381575,894,796 - 75,909,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1575,894,205 - 75,909,556 (-)EnsemblGRCm38mm10GRCm38
MGSCv371575,725,230 - 75,739,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361575,722,055 - 75,736,595 (-)NCBIMGSCv36mm8
Celera1577,395,780 - 77,410,351 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1535.05NCBI
Eef1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,462,645 - 109,478,021 (-)NCBIGRCr8
mRatBN7.27107,581,930 - 107,596,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,581,930 - 107,608,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,321,443 - 109,329,841 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,545,121 - 111,553,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,491,044 - 111,499,448 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,928,264 - 116,942,981 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,928,265 - 116,936,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,820,231 - 116,835,552 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,870,558 - 113,879,376 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17113,904,788 - 113,913,606 (-)NCBI
Celera7103,938,928 - 103,947,339 (-)NCBICelera
Cytogenetic Map7q34NCBI
Eef1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554542,284,892 - 2,299,169 (-)NCBIChiLan1.0ChiLan1.0
EEF1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,063,180 - 161,081,090 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,580,866 - 136,598,651 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08140,333,100 - 140,350,955 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18143,348,045 - 143,365,497 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8143,340,928 - 143,362,971 (-)Ensemblpanpan1.1panPan2
EEF1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,240,405 - 37,247,603 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,239,150 - 37,255,958 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,196,984 - 37,210,347 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,712,322 - 37,725,681 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,711,489 - 37,726,196 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,386,658 - 37,399,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,503,589 - 37,516,922 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01337,984,799 - 37,998,156 (-)NCBIUU_Cfam_GSD_1.0
Eef1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,112,915 - 1,127,546 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364708,538,821 - 8,553,970 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364708,538,899 - 8,553,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EEF1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4969,527 - 983,270 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14969,532 - 982,250 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.241,038,509 - 1,047,368 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EEF1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,800,115 - 137,818,264 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8137,799,428 - 137,813,120 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660392,075,527 - 2,093,549 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000024035   ⟹   ENSHGLP00000023817
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473513,154,327 - 13,173,477 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000024036   ⟹   ENSHGLP00000023818
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473513,154,327 - 13,173,477 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000024037   ⟹   ENSHGLP00000023819
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473513,155,900 - 13,165,200 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000024038   ⟹   ENSHGLP00000023820
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473513,156,119 - 13,165,200 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000024039   ⟹   ENSHGLP00000023821
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473513,158,783 - 13,165,200 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000024040   ⟹   ENSHGLP00000023822
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473513,158,783 - 13,165,200 (+)Ensembl
RefSeq Acc Id: XM_013069444   ⟹   XP_012924898
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,155,900 - 13,165,259 (+)NCBI
RefSeq Acc Id: XM_013069448   ⟹   XP_012924902
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,148,744 - 13,165,259 (+)NCBI
RefSeq Acc Id: XM_013069452   ⟹   XP_012924906
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,148,640 - 13,165,259 (+)NCBI
RefSeq Acc Id: XM_021250924   ⟹   XP_021106583
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,155,900 - 13,165,259 (+)NCBI
RefSeq Acc Id: XM_021250938   ⟹   XP_021106597
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,155,900 - 13,165,259 (+)NCBI
RefSeq Acc Id: XM_021250942   ⟹   XP_021106601
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,149,036 - 13,165,259 (+)NCBI
RefSeq Acc Id: XM_021250949   ⟹   XP_021106608
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,148,706 - 13,165,259 (+)NCBI
RefSeq Acc Id: XM_021250957   ⟹   XP_021106616
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,153,454 - 13,165,259 (+)NCBI
RefSeq Acc Id: XM_021250964   ⟹   XP_021106623
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,148,706 - 13,165,259 (+)NCBI
RefSeq Acc Id: XM_021250967   ⟹   XP_021106626
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,148,744 - 13,165,259 (+)NCBI
RefSeq Acc Id: XM_021250971   ⟹   XP_021106630
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,148,640 - 13,165,259 (+)NCBI
RefSeq Acc Id: XP_012924906   ⟸   XM_013069452
- Peptide Label: isoform X4
- UniProtKB: A0AAX6SCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106630   ⟸   XM_021250971
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SDM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106608   ⟸   XM_021250949
- Peptide Label: isoform X4
- UniProtKB: A0AAX6SCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106623   ⟸   XM_021250964
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SDM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924902   ⟸   XM_013069448
- Peptide Label: isoform X4
- UniProtKB: A0AAX6SCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106626   ⟸   XM_021250967
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SDM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106601   ⟸   XM_021250942
- Peptide Label: isoform X4
- UniProtKB: A0AAX6SCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106616   ⟸   XM_021250957
- Peptide Label: isoform X4
- UniProtKB: A0AAX6SCK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106583   ⟸   XM_021250924
- Peptide Label: isoform X1
- UniProtKB: G5AWF3 (UniProtKB/TrEMBL),   A0AAX6SDN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924898   ⟸   XM_013069444
- Peptide Label: isoform X2
- UniProtKB: G5AWF3 (UniProtKB/TrEMBL),   A0AAX6QT73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106597   ⟸   XM_021250938
- Peptide Label: isoform X3
- UniProtKB: G5AWF3 (UniProtKB/TrEMBL),   A0AAX6SEZ9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000023821   ⟸   ENSHGLT00000024039
Ensembl Acc Id: ENSHGLP00000023822   ⟸   ENSHGLT00000024040
Ensembl Acc Id: ENSHGLP00000023819   ⟸   ENSHGLT00000024037
Ensembl Acc Id: ENSHGLP00000023817   ⟸   ENSHGLT00000024035
Ensembl Acc Id: ENSHGLP00000023820   ⟸   ENSHGLT00000024038
Ensembl Acc Id: ENSHGLP00000023818   ⟸   ENSHGLT00000024036


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016981 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024037 ENTREZGENE
  ENSHGLT00000024038 ENTREZGENE
  ENSHGLT00000024039 ENTREZGENE
Gene3D-CATH 3.30.70.60 UniProtKB/TrEMBL
InterPro eEF-1beta-like_sf UniProtKB/TrEMBL
  EF-1_beta_acid_region_euk UniProtKB/TrEMBL
  EF1B_bsu/dsu UniProtKB/TrEMBL
  EF1B_bsu/dsu_GNE UniProtKB/TrEMBL
  Transl_elong_EF1B/ribosomal_S6 UniProtKB/TrEMBL
  Transl_elong_EF1B_B/D_CS UniProtKB/TrEMBL
NCBI Gene Eef1d ENTREZGENE
PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER UniProtKB/TrEMBL
  ELONGATION FACTOR 1-DELTA UniProtKB/TrEMBL
Pfam EF-1_beta_acid UniProtKB/TrEMBL
  EF1_GNE UniProtKB/TrEMBL
PROSITE EF1BD_2 UniProtKB/TrEMBL
SMART EF-1_beta_acid UniProtKB/TrEMBL
  EF1_GNE UniProtKB/TrEMBL
Superfamily-SCOP eEF-1beta-like UniProtKB/TrEMBL
UniProt A0AAX6QT73 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SCK3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SDM3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SDN1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SEZ9 ENTREZGENE, UniProtKB/TrEMBL
  G5AWF3 ENTREZGENE, UniProtKB/TrEMBL