LOC101702156 (granzyme B) - Rat Genome Database

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Pathways
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Gene: LOC101702156 (granzyme B) Heterocephalus glaber
Analyze
Symbol: LOC101702156 (Ensembl: GZMB)
Name: granzyme B
RGD ID: 18916826
Description: ENCODES a protein that exhibits serine-type endopeptidase activity (inferred); serine-type peptidase activity (inferred); INVOLVED IN granzyme-mediated programmed cell death signaling pathway (inferred); natural killer cell mediated cytotoxicity (inferred); negative regulation of translation (inferred); FOUND IN cytolytic granule (inferred); cytoplasm (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1); Gzmb
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248207,883,084 - 7,889,155 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248207,882,992 - 7,889,155 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000003572   ⟹   ENSHGLP00000003517
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248207,883,084 - 7,889,155 (+)Ensembl
RefSeq Acc Id: XM_004864211   ⟹   XP_004864268
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248207,882,992 - 7,889,155 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004864268 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB11956 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003517
Reference Protein Sequences
RefSeq Acc Id: XP_004864268   ⟸   XM_004864211
- UniProtKB: G5BRP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000003517   ⟸   ENSHGLT00000003572


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002596 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000003572 ENTREZGENE
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
InterPro Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
KEGG Report hgl:101702156 UniProtKB/TrEMBL
NCBI Gene LOC101702156 ENTREZGENE
PANTHER GRANZYME B UniProtKB/TrEMBL
  KALLIKREIN-RELATED UniProtKB/TrEMBL
Pfam Trypsin UniProtKB/TrEMBL
PRINTS CHYMOTRYPSIN UniProtKB/TrEMBL
PROSITE TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
SMART Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP SSF50494 UniProtKB/TrEMBL
UniProt G5BRP5 ENTREZGENE, UniProtKB/TrEMBL