LOC101700350 (cytochrome c oxidase assembly protein COX11, mitochondrial) - Rat Genome Database

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Gene: LOC101700350 (cytochrome c oxidase assembly protein COX11, mitochondrial) Heterocephalus glaber
Analyze
Symbol: LOC101700350 (Ensembl: COX11)
Name: cytochrome c oxidase assembly protein COX11, mitochondrial
RGD ID: 18916355
Description: ENCODES a protein that exhibits copper ion binding (inferred); INVOLVED IN ATP biosynthetic process (ortholog); intracellular monoatomic cation homeostasis (ortholog); negative regulation of glucokinase activity (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); mitochondrial complex IV deficiency nuclear type 23 (ortholog); FOUND IN mitochondrion (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: COX11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479510,248,786 - 10,255,860 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479510,232,740 - 10,255,876 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101700350
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479510,248,786 - 10,255,860 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479510,232,740 - 10,255,876 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COX11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381754,951,902 - 54,968,785 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1754,951,902 - 54,968,703 (-)EnsemblGRCh38hg38GRCh38
GRCh371753,029,263 - 53,046,146 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361750,384,262 - 50,401,053 (-)NCBINCBI36Build 36hg18NCBI36
Build 341750,384,265 - 50,401,053NCBI
Celera1749,491,515 - 49,508,317 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1748,388,664 - 48,405,450 (-)NCBIHuRef
CHM1_11753,094,177 - 53,110,962 (-)NCBICHM1_1
T2T-CHM13v2.01755,826,815 - 55,843,711 (-)NCBIT2T-CHM13v2.0
Cox11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391190,529,010 - 90,536,803 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1190,528,999 - 90,535,757 (+)EnsemblGRCm39 Ensembl
GRCm381190,638,184 - 90,645,977 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1190,638,173 - 90,644,931 (+)EnsemblGRCm38mm10GRCm38
MGSCv371190,499,498 - 90,507,291 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361190,454,263 - 90,461,026 (+)NCBIMGSCv36mm8
Celera11100,247,903 - 100,255,650 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1155.45NCBI
Cox11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81075,955,825 - 75,962,398 (+)NCBIGRCr8
mRatBN7.21075,458,735 - 75,465,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1075,458,749 - 75,465,322 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1080,077,850 - 80,084,503 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01079,582,829 - 79,589,482 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01075,061,190 - 75,067,762 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01078,168,691 - 78,173,845 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1078,111,050 - 78,174,584 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01078,023,818 - 78,028,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1074,353,436 - 74,360,009 (+)NCBICelera
Cytogenetic Map10q26NCBI
LOC102019456
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554517,635,704 - 7,642,724 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554517,635,704 - 7,642,724 (+)NCBIChiLan1.0ChiLan1.0
LOC100976343
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21971,105,666 - 71,154,197 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11775,914,765 - 75,964,256 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01749,009,099 - 49,058,145 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11753,874,459 - 53,923,431 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1753,915,841 - 53,923,431 (-)Ensemblpanpan1.1panPan2
COX11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1930,073,030 - 30,079,803 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl930,055,171 - 30,079,833 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha929,415,502 - 29,421,741 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0930,872,553 - 30,879,312 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl930,857,527 - 30,879,338 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1929,640,709 - 29,647,446 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0929,897,832 - 29,904,600 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0930,031,781 - 30,038,054 (-)NCBIUU_Cfam_GSD_1.0
LOC101961220
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560229,521,202 - 29,521,684 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364907,553,404 - 7,554,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COX11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1231,267,520 - 31,277,429 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11231,268,397 - 31,277,850 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21231,744,128 - 31,752,343 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COX11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11638,406,136 - 38,413,999 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1638,405,908 - 38,412,445 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660779,245,301 - 9,253,286 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000017133   ⟹   ENSHGLP00000016962
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462479510,248,786 - 10,255,860 (-)Ensembl
RefSeq Acc Id: XM_004859768   ⟹   XP_004859825
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479510,248,696 - 10,255,870 (-)NCBI
RefSeq Acc Id: XM_004859769   ⟹   XP_004859826
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479510,247,657 - 10,255,873 (-)NCBI
RefSeq Acc Id: XM_021239941   ⟹   XP_021095600
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479510,232,740 - 10,255,872 (-)NCBI
RefSeq Acc Id: XM_021239942   ⟹   XP_021095601
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479510,240,093 - 10,255,872 (-)NCBI
RefSeq Acc Id: XM_021239943   ⟹   XP_021095602
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479510,249,372 - 10,255,874 (-)NCBI
RefSeq Acc Id: XM_021239944   ⟹   XP_021095603
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479510,244,062 - 10,255,876 (-)NCBI
RefSeq Acc Id: XP_021095600   ⟸   XM_021239941
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021095601   ⟸   XM_021239942
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021095603   ⟸   XM_021239944
- Peptide Label: isoform X5
RefSeq Acc Id: XP_004859826   ⟸   XM_004859769
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004859825   ⟸   XM_004859768
- Peptide Label: isoform X1
- UniProtKB: G5BPA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095602   ⟸   XM_021239943
- Peptide Label: isoform X4
Ensembl Acc Id: ENSHGLP00000016962   ⟸   ENSHGLT00000017133


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012128 Ensembl, ENTREZGENE
  ENSHGLG00100014196 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000017133 ENTREZGENE
  ENSHGLT00100019456 UniProtKB/TrEMBL
Gene3D-CATH 2.60.370.10 UniProtKB/TrEMBL
InterPro CtaG/Cox11_dom_sf UniProtKB/TrEMBL
  Cyt_c_oxidase_assmbl_CtaG UniProtKB/TrEMBL
KEGG Report hgl:101700350 UniProtKB/TrEMBL
NCBI Gene LOC101700350 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11, MITOCHONDRIAL-RELATED UniProtKB/TrEMBL
  CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11-RELATED UniProtKB/TrEMBL
Pfam CtaG_Cox11 UniProtKB/TrEMBL
Superfamily-SCOP SSF110111 UniProtKB/TrEMBL
UniProt A0AAX6PUQ7_HETGA UniProtKB/TrEMBL
  A0AAX6RFT3_HETGA UniProtKB/TrEMBL
  A0AAX6RH03_HETGA UniProtKB/TrEMBL
  A0AAX6RIM6_HETGA UniProtKB/TrEMBL
  G5BPA1 ENTREZGENE, UniProtKB/TrEMBL